DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS27A and fau

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_001005136.1 Gene:fau / 448719 XenbaseID:XB-GENE-6073800 Length:133 Species:Xenopus tropicalis


Alignment Length:106 Identity:40/106 - (37%)
Similarity:58/106 - (54%) Gaps:11/106 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
            ||:||:   |::: ||||...:||..:|.:|...||||.:.|.::.||..|.:..||....:...
 Frog     1 MQLFVR---GQSLHTLEVSGQETISQIKDQISSLEGIPSEDQVVVLAGSPLSEEHTLQQCGVCDL 62

  Fly    65 STLHLVLRLRGG------AKKRKKKNYSTPKKIKHKRKKVK 99
            |||.:|.||.||      |:..|.:. .|||..|.::||.|
 Frog    63 STLDIVARLLGGKVHGSLARAGKVRG-QTPKVAKQEKKKKK 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 29/75 (39%)
Ribosomal_S27 103..147 CDD:396259
fauNP_001005136.1 Ubl_FUBI 1..74 CDD:340491 29/75 (39%)
Ribosomal_S30 75..132 CDD:368101 9/29 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.