DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and rad23b

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_956858.2 Gene:rad23b / 393536 ZFINID:ZDB-GENE-040426-1487 Length:381 Species:Danio rerio


Alignment Length:91 Identity:29/91 - (31%)
Similarity:53/91 - (58%) Gaps:11/91 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
            |||.:|||..:|..::::..:|::.:|.||::   |:|.|...|:||:|||.|.|...|.:|.|.
Zfish     1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALKEYKID 65

  Fly    63 KESTLHLVLRLRGGAKKRKKKNYSTP 88
            :::.:.:::        .|.|:.|.|
Zfish    66 EKNFVVVMV--------TKPKSASAP 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 25/77 (32%)
Ribosomal_S27 103..147 CDD:396259
rad23bNP_956858.2 rad23 1..379 CDD:273167 29/91 (32%)
RAD23_N 1..78 CDD:176400 26/84 (31%)
UBA1_Rad23 159..198 CDD:270560
XPC-binding 253..308 CDD:286376
UBA2_HR23B 337..381 CDD:270611
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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