DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and Oas1d

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:XP_038945418.1 Gene:Oas1d / 304508 RGDID:1310349 Length:389 Species:Rattus norvegicus


Alignment Length:50 Identity:10/50 - (20%)
Similarity:22/50 - (44%) Gaps:4/50 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TITLEVEPSDTIENVKAKIQDKEGI---PPDQQRLIFAGKQLEDGRTLSD 58
            |:..:...::..|.:..::|....:   |.|..|.: ||..|:....|::
  Rat   280 TLCYDFNHNEVSEYLNKQLQKDRPVILDPADPTRNV-AGSNLQAWHLLAE 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 10/49 (20%)
Ribosomal_S27 103..147 CDD:396259
Oas1dXP_038945418.1 NT_2-5OAS_ClassI-CCAase 27..167 CDD:143390
OAS1_C 173..354 CDD:402171 10/49 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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