DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and Oas1b

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_653353.2 Gene:Oas1b / 246268 RGDID:708393 Length:379 Species:Rattus norvegicus


Alignment Length:82 Identity:18/82 - (21%)
Similarity:33/82 - (40%) Gaps:17/82 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK--ESTLHLVLRLRGGAKKRKKKNYST-- 87
            |.|:.|.  :||.....:......|.|..|:.:|..:  .:.|.|:      .|.::...|.|  
  Rat   220 KEKLGDP--LPPQYALELLTIYAWERGGRLTKFNTAQGFRTVLELI------TKYKQLLIYWTVC 276

  Fly    88 -----PKKIKHKRKKVK 99
                 |:..|:.|:::|
  Rat   277 YDFQHPEVSKYLRRQLK 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 11/50 (22%)
Ribosomal_S27 103..147 CDD:396259
Oas1bNP_653353.2 NT_2-5OAS_ClassI-CCAase 27..176 CDD:143390
OAS1_C 164..347 CDD:287404 18/82 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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