DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and Rad23b

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_033037.2 Gene:Rad23b / 19359 MGIID:105128 Length:416 Species:Mus musculus


Alignment Length:68 Identity:24/68 - (35%)
Similarity:44/68 - (64%) Gaps:3/68 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
            ||:.:|||..:|..::::|.:|::.:|.||:.::|   .|...|:||:|||.|.|...|.:|.|.
Mouse     1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKID 65

  Fly    63 KES 65
            :::
Mouse    66 EKN 68

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 24/68 (35%)
Ribosomal_S27 103..147 CDD:396259
Rad23bNP_033037.2 rad23 1..414 CDD:273167 24/68 (35%)
RAD23_N 1..78 CDD:176400 24/68 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 83..175
UBA1_Rad23 189..228 CDD:270560
XPC-binding 276..331 CDD:286376
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 333..356
UBA2_HR23B 372..416 CDD:270611
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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