DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and C16C8.11

DIOPT Version :10

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_494548.1 Gene:C16C8.11 / 173690 WormBaseID:WBGene00015849 Length:214 Species:Caenorhabditis elegans


Alignment Length:66 Identity:18/66 - (27%)
Similarity:39/66 - (59%) Gaps:2/66 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
            ::.|:..::.....:::|.:|.||:.:.|||..:..|...||.|.|.:.|:||  :.::::.|::
 Worm   149 SMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY--KWDTSVELLV 211

  Fly    72 R 72
            |
 Worm   212 R 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 18/66 (27%)
Ribosomal_S27 103..147 CDD:460261
C16C8.11NP_494548.1 COG5391 <9..>111 CDD:227680
ubiquitin 149..212 CDD:459726 17/64 (27%)
Blue background indicates that the domain is not in the aligned region.

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