DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and K10C2.12

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_001257042.1 Gene:K10C2.12 / 13221052 WormBaseID:WBGene00206386 Length:88 Species:Caenorhabditis elegans


Alignment Length:92 Identity:24/92 - (26%)
Similarity:41/92 - (44%) Gaps:19/92 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ::.||  ..|.||.|.:..:.|:...|:||::...:|...|.::|....|||.:.|.:|.|:...
 Worm     7 VYNKTRKYAGHTIDLNLGDNATVAEAKSKIEEMTTVPSQIQWIVFGTTHLEDSKPLREYGIRDGY 71

  Fly    66 TLHLVLRLRGGAKKRKKKNYSTPKKIK 92
            |:                 ||||..::
 Worm    72 TI-----------------YSTPTYVE 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 20/74 (27%)
Ribosomal_S27 103..147 CDD:396259
K10C2.12NP_001257042.1 Ubl_ubiquitin_like 16..74 CDD:340559 18/74 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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