DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cnot4 and AT5G60170

DIOPT Version :9

Sequence 1:NP_001260343.1 Gene:Cnot4 / 34416 FlyBaseID:FBgn0051716 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_001190578.1 Gene:AT5G60170 / 836139 AraportID:AT5G60170 Length:987 Species:Arabidopsis thaliana


Alignment Length:1164 Identity:268/1164 - (23%)
Similarity:446/1164 - (38%) Gaps:333/1164 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CPLCMEPLEVDDLTFFPCTCGYQICRFCWHRI--RTDENKL---CPACRKEYPENPADFKPLSQE 72
            ||||.|.:::.|....||.||||||.:|||.|  ..:::::   |||||..|.:.......::.:
plant     9 CPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYDKEKIVGMTVNCD 73

  Fly    73 EMIAFKSQKRQRDQQRKQKITENRK-HLANVRVVQKNLVFVVGLPPRLADADILKKHEYFGKYGK 136
            .:.:..:.:|::.|:.|.|.:|.|| .|.:|||:|:|||::||||..|||.|:|:..||||:|||
plant    74 SLASEGNMERKKIQKSKSKSSEGRKQQLTSVRVIQRNLVYIVGLPLNLADEDLLQHKEYFGQYGK 138

  Fly   137 IHKVVINPSTTYAGV-QVRVGPSASAYVTYVNNSDALRAIQSVNNIMIDGRLIKTSLGTTKYCSH 200
            :.||  :.|.|.:|| |.....:.|.|:||....:|:|.||:|:..::||:.:|...||||||..
plant   139 VLKV--SMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVHGFILDGKPLKACFGTTKYCHA 201

  Fly   201 FMKNQQCPKGDCMYLHELGDPEASFTKEEM---------------------HQGKHLEYEKRLHD 244
            :::|..|...||:||||:|..:.||||:|:                     |.|..|......:.
plant   202 WLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYTRSRVQQITGATNILQHHSGNMLPPPLDAYC 266

  Fly   245 TLIASLGP-------NATGI-----VNGNGASKANVAIPSSSSASSSSSGSGTNGSSASGNAQQK 297
            :..:|..|       |||.:     .:|:|:|..:.|:|:::|..:..|.:.:..|:.|.:.|:.
plant   267 SDSSSAKPIIKVPSTNATSVPRYSPPSGSGSSSRSTALPAAASWGTHQSLATSVTSNGSSDIQRS 331

  Fly   298 EAWPSLSVSPING--------KEAAATATSSSGKSKREKLRNEKRHEKNKAKNK--NGSNTNANA 352
                    :.:||        ..||....||:...||...:.|.:...:|.|..  .....|...
plant   332 --------TSVNGTLPFSAVVANAAHGPVSSNDILKRPSRKEESQIVMDKVKPSVLKPLQHNVVV 388

  Fly   353 SNKENYVPETRSSTSTETFAEATADAPASTKAEPPQASSNRTRADRGKDRTTASAKEQKKSKEAA 417
            |..|......|..||.. .:.:...|......:.|.|.|.|   |..|..:|.|:.:        
plant   389 SGSERITAPDRDPTSNR-LSSSVDSAYGGRDIDQPSAYSGR---DIDKPSSTVSSFD-------- 441

  Fly   418 PAPAASKPAERVETSESTIRQKKA-EVTESCEDNLPQKRLA-GTNVQRSVSSCSENSEGHVSESS 480
               ||::..|.|.|..:.:..... .:|.:|.|..|...:| |          |::.:|.:.:..
plant   442 ---AANEAVEDVPTVSNLLDGVACMRITMNCRDERPDITMAIG----------SQSDQGSIRQPG 493

  Fly   481 LSEKSLTGDYVEEKC---NSVNSESQQESVKFQEELEKSNEAIVEAETILPTAESSEDISPAAVA 542
             ||.|...|.  |:|   :|:|::  ::::..::.:.::.          |..:...|:......
plant   494 -SEVSKLPDL--EQCRIDSSINTD--KKAISLEDRIPRTR----------PGWDWISDLQSQMQG 543

  Fly   543 PGNGEVEGCLPVVDPVEP-PSLADNGSRVTDALSKLNIFDDTPSFFTSPSFQQAPILKNKLDLEM 606
            ....:||. :..:|...| |......||:...||..::  ||....:          ::.|..|:
plant   544 SSKLQVED-ISTLDSQRPHPEEDIIHSRLLSNLSSSSL--DTNHMAS----------RSSLPCEV 595

  Fly   607 RQS---HLPDLVNDIDGIQKASNTNEWEEAFKNVMMGNTQHMEEQLLQQQHLQQHQNLRHQLVLQ 668
            |.|   |||      :|..:.|.::.....|.|.......:.|:.:|..             :|.
plant   596 RGSDRLHLP------NGFGEKSMSSVEHSLFANEGRNKVNNAEDAILSN-------------ILS 641

  Fly   669 QEEFLRMQELQKRNNFATQINGPANDFLRAYELRAQANAIIQQQLLQQHAGENLFGGNMSKFFDF 733
            .:.....:.|...:|.|..:.          |:..:::.:.....|:||       .|.|: |.|
plant   642 LDFDPWDESLTSPHNLAELLG----------EVDQRSSTLKPSNFLKQH-------NNQSR-FSF 688

  Fly   734 HKSQPQSHHQYLNGHPPQINGNGAVPEPQRVAASLESNRLNSPFVENGLINSQQQQQQQQQQQKQ 798
            .:.:..|:..|.:                                ||..|..|..:.:..|:.  
plant   689 ARYEESSNQAYDS--------------------------------ENYSIYGQLSRDKPIQES-- 719

  Fly   799 RMMGMYEFMPPNTQSQQNRFTQNSIVDDDLGFDPFVETQKGLAELMENEVVQKQSINNENPLPKL 863
               .|...:..|.....|.|..|                  .|..::|........:::||:.: 
plant   720 ---AMSRDIYRNNLGSVNGFASN------------------FAGGLDNFAASPLFSSHKNPVSR- 762

  Fly   864 PPQPQVPP---HPQLVDNLQRARMPPPGFNHVNTLGLGGASRLQLTSKIIPFMNMPVNGVGN--- 922
             ||...||   .|.        |:|||||:....:||...:.|                 ||   
plant   763 -PQVSAPPGFSAPN--------RLPPPGFSSHERVGLSSDTTL-----------------GNRFL 801

  Fly   923 --SGAQGQHQMPMGVNWNAPMGMHQNPGQPVGDSQLQHPMAHNKVYNNSDWTSMDPAILSF---- 981
              :..:..:|:|                .|||:|.           ..||...:|||||:.    
plant   802 DSTSLRNAYQVP----------------PPVGNSN-----------GASDIDFVDPAILAVGRGM 839

  Fly   982 ------------RQYSSFPQNQIPPHPQQQQDLFLQHLAQQQNSQSGGFNNQAQQML-----PMG 1029
                        .|.:|| :|:...|..:||.|   ..|||.|    ||::..:.:.     |.|
plant   840 VNADLDMRSGFSSQLNSF-ENETGLHMLRQQSL---SSAQQVN----GFHHDLRNLSPSLNDPYG 896

  Fly  1030 MPNSLLNGQQ-----------TQPPQVNA-----------------NVQGMLEFLKSRQ 1060
            ..:.|::..|           .|.|..|:                 |..||.|.|::.:
plant   897 FSSRLMDQTQGSSLSPFSQLPRQQPSANSILSNGHHWDKWNEGQSVNNIGMAELLRNER 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cnot4NP_001260343.1 zf-RING_4 13..59 CDD:291250 23/50 (46%)
RRM_CNOT4 103..203 CDD:240884 47/100 (47%)
AT5G60170NP_001190578.1 MOT2 2..>377 CDD:227502 123/377 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 83 1.000 Domainoid score I2883
eggNOG 1 0.900 - - E1_COG5175
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 223 1.000 Inparanoid score I1183
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002983
OrthoInspector 1 1.000 - - otm3149
orthoMCL 1 0.900 - - OOG6_102042
Panther 1 1.100 - - LDO PTHR12603
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1980
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.910

Return to query results.
Submit another query.