DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cnot4 and cnot4a

DIOPT Version :9

Sequence 1:NP_001260343.1 Gene:Cnot4 / 34416 FlyBaseID:FBgn0051716 Length:1062 Species:Drosophila melanogaster
Sequence 2:XP_697509.2 Gene:cnot4a / 569055 ZFINID:ZDB-GENE-090313-262 Length:772 Species:Danio rerio


Alignment Length:1126 Identity:328/1126 - (29%)
Similarity:428/1126 - (38%) Gaps:497/1126 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DDAVECPLCMEPLEVDDLTFFPCTCGYQICRFCWHRIRTDENKLCPACRKEYPENPADFKPLSQE 72
            :|.:||||||||||:||:.|||||||||||||||||||||||.|||||||.|||:||.:||||||
Zfish     9 EDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQE 73

  Fly    73 EMIAFKSQKRQRDQQRKQKITENRKHLANVRVVQKNLVFVVGLPPRLADADILKKHEYFGKYGKI 137
            |:...|::|:|:..::|||:||||||||:|||||:||||||||..|||||::||:.|||||:|||
Zfish    74 EIQRIKNEKKQKLNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRLADAEVLKRPEYFGKFGKI 138

  Fly   138 HKVVINPSTTYAGVQVRVGPSASAYVTYVNNSDALRAIQSVNNIMIDGRLIKTSLGTTKYCSHFM 202
            ||||||.||:|||.|   ||||||||||:.:.|||||||.|||:::|||.:|.|||||||||:|:
Zfish   139 HKVVINNSTSYAGSQ---GPSASAYVTYIRSEDALRAIQCVNNVIVDGRTLKASLGTTKYCSYFL 200

  Fly   203 KNQQCPKGDCMYLHELGDPEASFTKEEMHQGKHLEYEKRLHDTLIASLGPNATGIVNGNGASKAN 267
            |:.||||.||||||||||..||||||||..|||.|||::|...|..:   |.|.::......|  
Zfish   201 KSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQDLYKA---NPTFLLTSTCGEK-- 260

  Fly   268 VAIPSSSSASSSSSGSGTNGSSASGNAQQKEAWPSLSVSPINGKEAAATATSSSGKSKREKLRNE 332
                |.|.::|:...:.||          ||.||||                             
Zfish   261 ----SKSKSNSTQRPNSTN----------KEGWPSL----------------------------- 282

  Fly   333 KRHEKNKAKNKNGSNTNANASNKENYVPETRSSTSTETFAEATADAPASTKAEPPQASSNRTRAD 397
                :|..|..||..|            |.|.|                    ||          
Zfish   283 ----QNYGKMVNGLTT------------EHRKS--------------------PP---------- 301

  Fly   398 RGKDRTTASAKEQKKSKEAAPAPAASKPAERVETSESTIRQKKAEVTESCEDNLPQKRLAGTNVQ 462
                                                                             
Zfish   302 ----------------------------------------------------------------- 301

  Fly   463 RSVSSCSENSEGHVSESSLSEKSLTGDYVEEKCNSVNSESQQESVKFQEELEKSNEAIVEAETIL 527
              :..|..:|:           .:|.|                    :.:||:.    .|..|.|
Zfish   302 --LLDCLTDSD-----------HMTPD--------------------EPDLEQG----TEQNTGL 329

  Fly   528 PTAESSEDISPAAVAPGNGEVEGCLPVVDPVEPPSLADNGSRVTDALSKLNIFDDTPSFFTSPSF 592
            |.       .|:|:.|.:       |:..|.||.|:. ||..::...|     .|:||  ..|..
Zfish   330 PP-------FPSALEPTS-------PIDKPSEPISIG-NGENISQTSS-----SDSPS--PPPGL 372

  Fly   593 QQAPILKNKLDLEMRQSHLPDLVNDIDGIQKASNTNEWEEAFKNVMMGNTQHMEEQLLQQQHLQQ 657
            .:                 |.||..|.                                      
Zfish   373 TK-----------------PSLVVPIS-------------------------------------- 382

  Fly   658 HQNLRHQLVLQQEEFLRMQELQKRNNFATQINGPANDFLRAYELRAQANAIIQQQLLQQHAGENL 722
                             :.||..|:.|    .|.|.:                        .::|
Zfish   383 -----------------VAELTARSPF----EGAAAE------------------------SQSL 402

  Fly   723 FGGNMSKFFDFHKSQPQSHHQYLNGHPPQING-NGA-----VPEPQRVAAS-----LESNRLNSP 776
            |..|.    :|....|     ..:|.||..|. .||     .||||.:..|     ..|....:.
Zfish   403 FSDNS----NFRHPNP-----IPSGLPPFSNSPQGASDWPMTPEPQSLFTSETIPVSSSTDWQAA 458

  Fly   777 FVENGLINSQQQQQQQQQQQKQRMMGMYEFMPPNTQSQQNRFTQNSIVDDDLGFDPFVETQKGLA 841
            |   |..:|.:||||                                 |||||||||..|:|.||
Zfish   459 F---GFGSSAKQQQQ---------------------------------DDDLGFDPFDVTRKALA 487

  Fly   842 ELMENEVVQKQSINNENPLPKLPPQPQ--VPPHPQLVDNLQR--------------ARMPPPG-- 888
            :|:|.|:    |:...:||...|...|  :|...|...:||.              ||.|..|  
Zfish   488 DLIEKEL----SVQEHSPLSPNPSSHQTGLPNGQQRFPHLQHRGLYNSFSLPQHMAARHPWMGIP 548

  Fly   889 -------FNHVNT------------------LGLGG-------ASRLQLTSK--------IIPFM 913
                   .||..|                  .||||       .|...:..|        ::|.:
Zfish   549 TRNNLTHLNHTATAAAHSHFLDLSMPAQHHSTGLGGIPISENNGSVESINVKEWQDGLRALLPNI 613

  Fly   914 NMPVNGVGNSGAQGQHQMPMGVNWNAPMGMHQNPGQPVGDSQLQHPMAHNKVYNNSDWTSMDPAI 978
            |:...|:.||.:.........||         :.|.|:|.:.:.|.::.:   :.:.|  |||||
Zfish   614 NINFGGLPNSTSSSSSSSTSSVN---------HIGVPIGSAGISHSLSWD---STASW--MDPAI 664

  Fly   979 LSFRQYSSFP----------QNQIPPHPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPMGMPNS 1033
            :     :..|          |:..|||       :|:.|               |.:..|..|.|
Zfish   665 I-----TGIPASTGNSLDCLQDDNPPH-------WLKSL---------------QALTEMDGPPS 702

  Fly  1034 LLNGQQTQPPQVNANVQGMLE 1054
              :....|||..     |:|:
Zfish   703 --SSALPQPPHT-----GLLD 716

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cnot4NP_001260343.1 zf-RING_4 13..59 CDD:291250 41/45 (91%)
RRM_CNOT4 103..203 CDD:240884 73/99 (74%)
cnot4aXP_697509.2 MOT2 9..>360 CDD:227502 218/564 (39%)
zf-RING_4 14..60 CDD:291250 41/45 (91%)
RRM_CNOT4 104..201 CDD:240884 73/99 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595666
Domainoid 1 1.000 153 1.000 Domainoid score I4255
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 438 1.000 Inparanoid score I1647
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002983
OrthoInspector 1 1.000 - - otm24663
orthoMCL 1 0.900 - - OOG6_102042
Panther 1 1.100 - - LDO PTHR12603
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4260
SonicParanoid 1 1.000 - - X1980
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.920

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