DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh1 and MDH3

DIOPT Version :9

Sequence 1:NP_001285803.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_010205.1 Gene:MDH3 / 851481 SGDID:S000002236 Length:343 Species:Saccharomyces cerevisiae


Alignment Length:390 Identity:89/390 - (22%)
Similarity:150/390 - (38%) Gaps:111/390 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVL--------EGVVMELADCA 61
            ::|.:.||:|                |..||:.| ||.:.|.|..|        ||:..:|:.  
Yeast     2 VKVAILGASG----------------GVGQPLSL-LLKLSPYVSELALYDIRAAEGIGKDLSH-- 47

  Fly    62 LPLLVEVVPTTDPAVGF-KD--------VSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALD 117
                   :.|....||: ||        .....:...:|||.|:.|.||...|..|.::...|:.
Yeast    48 -------INTNSSCVGYDKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVG 105

  Fly   118 KFAKKDVKVLVVGNPANTNALVC-------SSYAPSIPRENFSAMTRLDQNRATSQIAAKLGVPI 175
            ||| .:.::||:.||.|:...:.       ..:.|.    |...:|.||..||.:.:     |..
Yeast   106 KFA-PNARILVISNPVNSLVPIAVETLKKMGKFKPG----NVMGVTNLDLVRAETFL-----VDY 160

  Fly   176 SAVKNIIIWGNHSSTQYPDAGQ--------AKVTANG--TVKSVVDAINDNGYL------QGSFV 224
            ..:||            |..||        .|||..|  :.::::..|.|...:      ...|:
Yeast   161 LMLKN------------PKIGQEQDKTTMHRKVTVIGGHSGETIIPIITDKSLVFQLDKQYEHFI 213

  Fly   225 ETVQKRGAAVIAARK------MSSAMSAAKAACDHMHDWWNGTAPGQFVSMGVFSDGSYDSPKD- 282
            ..||..|..::.|::      :|.|.:.||.|.:.:..:.|.....:.:|..|:..|..:..|. 
Yeast   214 HRVQFGGDEIVKAKQGAGSATLSMAFAGAKFAEEVLRSFHNEKPETESLSAFVYLPGLKNGKKAQ 278

  Fly   283 --------VIFSFPVEIKNKQWKIVSGLT-----LSDFAKTKLSVTGKELQEEKDEALS-VLDSN 333
                    ..||.|:.::|  ..:||..|     ||...:..::...|||::..::..| :|||:
Yeast   279 QLVGDNSIEYFSLPIVLRN--GSVVSIDTSVLEKLSPREEQLVNTAVKELRKNIEKGKSFILDSS 341

  Fly   334  333
            Yeast   342  341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh1NP_001285803.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 85/381 (22%)
MDH_euk_cyt 6..328 CDD:130819 85/381 (22%)
MDH3NP_010205.1 MDH_euk_gproteo 3..339 CDD:130833 86/385 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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