DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh1 and AT5G58330

DIOPT Version :9

Sequence 1:NP_001285803.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_851214.1 Gene:AT5G58330 / 835945 AraportID:AT5G58330 Length:443 Species:Arabidopsis thaliana


Alignment Length:321 Identity:148/321 - (46%)
Similarity:197/321 - (61%) Gaps:6/321 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADCALPLLVEVV 69
            |.:.|:||||.|:..||:.:|.|||||.||||.|.||.....:..||||.|||.|...|||.||.
plant   100 INIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVD 164

  Fly    70 PTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFAKKDVKVLVVGNPAN 134
            ..|||...|:||..|.|:||.||..||||.|||..|.:||..||:||:|.|..:|||||||||.|
plant   165 IGTDPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVKVLVVGNPCN 229

  Fly   135 TNALVCSSYAPSIPRENFSAMTRLDQNRATSQIAAKLGVPISAVKNIIIWGNHSSTQYPDAGQAK 199
            ||||:|...||:||.:||.|:||||:|||..|:|.|.||....|.|:.||||||:||.||...|:
plant   230 TNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 294

  Fly   200 VTANGTVKSVVDAINDNGYLQGSFVETVQKRGAAVIAARKMSSAMSAAKAACDHMHDWWNGTAPG 264
            :  ||.  .|.:.|.|:.:|:..|.|:|||||..:|.....|||.|.|.:..|.:......|..|
plant   295 I--NGL--PVKEVITDHKWLEEGFTESVQKRGGLLIQKWGRSSAASTAVSIVDAIKSLVTPTPEG 355

  Fly   265 QFVSMGVFSDGS-YDSPKDVIFSFPVEIK-NKQWKIVSGLTLSDFAKTKLSVTGKELQEEK 323
            .:.|.||::||: |...:.::||.|...| :..:::|..:.:.|:.:.:::.:..||..||
plant   356 DWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQRIAKSEAELLAEK 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh1NP_001285803.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 148/321 (46%)
MDH_euk_cyt 6..328 CDD:130819 147/320 (46%)
AT5G58330NP_851214.1 PLN00112 1..443 CDD:215060 148/321 (46%)
MDH_choloroplast_like 98..421 CDD:133423 148/321 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53893
OrthoDB 1 1.010 - - D1118998at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101066
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.690

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