DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdh1 and mdh1

DIOPT Version :9

Sequence 1:NP_001285803.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_001303830.1 Gene:mdh1 / 448318 XenbaseID:XB-GENE-484872 Length:353 Species:Xenopus tropicalis


Alignment Length:331 Identity:215/331 - (64%)
Similarity:258/331 - (77%) Gaps:1/331 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEPIRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADCALPLL 65
            |.||::|:||||||||||||||.||:|:|||||||::|.||||.||:.|||||||||.|||||||
 Frog     1 MPEPVKVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLL 65

  Fly    66 VEVVPTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFAKKDVKVLVVG 130
            .||:.|....|.|||:..|.|||:|||:|||||||||.||||||::||.||:|::||.|||:|||
 Frog    66 KEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVG 130

  Fly   131 NPANTNALVCSSYAPSIPRENFSAMTRLDQNRATSQIAAKLGVPISAVKNIIIWGNHSSTQYPDA 195
            ||||||.|.....|||||:||||.:||||.|||..|||.||.|....|||:||||||||||||||
 Frog   131 NPANTNCLTAMKSAPSIPKENFSCLTRLDHNRAKGQIALKLNVASDDVKNVIIWGNHSSTQYPDA 195

  Fly   196 GQAKVTANGTVKSVVDAINDNGYLQGSFVETVQKRGAAVIAARKMSSAMSAAKAACDHMHDWWNG 260
            ..|.|...|......:|:.::.:|:|.|:.|||:||||||.|||:|||||||||.|||:.|.|.|
 Frog   196 SHATVNLQGKDVGAFEAVKNDDWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFG 260

  Fly   261 TAPGQFVSMGVFSDG-SYDSPKDVIFSFPVEIKNKQWKIVSGLTLSDFAKTKLSVTGKELQEEKD 324
            |..||||||||.||| ||..|:|:::|||:.||||.||||.||.::||::.|:.:|.|||.|||:
 Frog   261 TPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEKE 325

  Fly   325 EALSVL 330
            .||..|
 Frog   326 TALEFL 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh1NP_001285803.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 211/324 (65%)
MDH_euk_cyt 6..328 CDD:130819 210/322 (65%)
mdh1NP_001303830.1 MalateDH-SF1 2..327 CDD:130820 211/324 (65%)
MDH_cytoplasmic_cytosolic 3..328 CDD:133421 211/324 (65%)
PTS1 351..353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2752
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4324
Inparanoid 1 1.050 427 1.000 Inparanoid score I1710
OMA 1 1.010 - - QHG53893
OrthoDB 1 1.010 - - D1118998at2759
OrthoFinder 1 1.000 - - FOG0004059
OrthoInspector 1 1.000 - - oto104830
Panther 1 1.100 - - LDO PTHR23382
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4080
SonicParanoid 1 1.000 - - X2809
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

Return to query results.
Submit another query.