DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh1 and CG13334

DIOPT Version :9

Sequence 1:NP_001285803.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_001246301.1 Gene:CG13334 / 36510 FlyBaseID:FBgn0033856 Length:361 Species:Drosophila melanogaster


Alignment Length:327 Identity:76/327 - (23%)
Similarity:129/327 - (39%) Gaps:33/327 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADCALPLLVEVVP 70
            ::.|.| |||:..::..|:....:...     |.:|||...:...|.:..:.|...|. ...|||
  Fly    50 KISVVG-AGQVGTAISAMLLLRNLTKN-----LVILDINYELAKAEALDFQHASAFLS-DARVVP 107

  Fly    71 TTDPAVGFKDVSAAFL-VGAMPRKEGMERKDLLSANVKIFRTQGQALDKFAK--KDVKVLVVGNP 132
            ..| :...||.....: .||.|..:...|...:...|:|.:   :|:.|..:  .:...:::.||
  Fly   108 CGD-STNSKDSDVVIITAGARPSGKDRSRLAAMQKTVEILK---KAVPKLVELSPNATFIIISNP 168

  Fly   133 ANTNALVCSSYA----PSIPREN-FSAMTRLDQNRATSQIAAKLGVPISAVKNIIIWGNHSSTQY 192
            |:.     .:||    .::|:.. |:....||..|..:.||.:|.:|.|.|...:| |.|.::..
  Fly   169 ADV-----MTYAVQRITNLPKHRCFTTGCHLDTVRFRNLIANRLRLPPSQVHGYVI-GEHGASAV 227

  Fly   193 P---DAGQAKVTANGTVKSVVDAINDNGYLQGSFVETVQKRGAAVIAARKMSSAMSAAKAACDHM 254
            |   ....|.:..|..||::  |..|:........:.|...|.|| |..|..:..:.|....|.:
  Fly   228 PVWSSVSIAGIRLNDVVKNL--ACGDDPENWAKINKQVTTGGLAV-AKTKGYTNWAIALTCADIV 289

  Fly   255 HDWWNGTAPGQFVSMGVFSDGSYDSPKDVIFSFPVEIKNKQWKIVSGLTLSDFAKTKLSVTGKEL 319
            .....|  .|:...:|....|......:|:.|.|..:.......|..|.|:|..::||..:...|
  Fly   290 QAMSGG--KGKIACVGTDMKGLNGIQDNVVLSLPCLVTAGGISHVFELPLTDVEQSKLLASANIL 352

  Fly   320 QE 321
            .|
  Fly   353 LE 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh1NP_001285803.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 76/327 (23%)
MDH_euk_cyt 6..328 CDD:130819 76/327 (23%)
CG13334NP_001246301.1 LDH_1 46..358 CDD:133429 76/327 (23%)
L-LDH-NAD 53..354 CDD:273796 75/322 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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