DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdh1 and Mdh1

DIOPT Version :10

Sequence 1:NP_609394.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_001303806.1 Gene:Mdh1 / 24551 RGDID:3072 Length:355 Species:Rattus norvegicus


Alignment Length:333 Identity:219/333 - (65%)
Similarity:258/333 - (77%) Gaps:1/333 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEPIRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADCALPLL 65
            |:|||||:||||||||||||||.|..|.||||||||:|.||||.||:|||:||:|||.|||||||
  Rat     1 MSEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 65

  Fly    66 VEVVPTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFAKKDVKVLVVG 130
            .:|:.|....|.|||:..|.|||:|||:|||||||||.||||||::||.||:|:|||.|||:|||
  Rat    66 QDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKKSVKVIVVG 130

  Fly   131 NPANTNALVCSSYAPSIPRENFSAMTRLDQNRATSQIAAKLGVPISAVKNIIIWGNHSSTQYPDA 195
            ||||||.|..|..|||||:||||.:||||.|||.||||.||||....|||:|||||||||||||.
  Rat   131 NPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDV 195

  Fly   196 GQAKVTANGTVKSVVDAINDNGYLQGSFVETVQKRGAAVIAARKMSSAMSAAKAACDHMHDWWNG 260
            ..|||...|....|.:|:.|:.:|:|.|:.|||:||||||.|||:|||||||||..||:.|.|.|
  Rat   196 NHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAISDHIRDIWFG 260

  Fly   261 TAPGQFVSMGVFSDG-SYDSPKDVIFSFPVEIKNKQWKIVSGLTLSDFAKTKLSVTGKELQEEKD 324
            |..|:||||||.||| ||..|.|:::||||.||||.||.|.||.::||::.|:.:|.|||.|||:
  Rat   261 TPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKE 325

  Fly   325 EALSVLDS 332
            .|...|.|
  Rat   326 TAFEFLSS 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh1NP_609394.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 215/324 (66%)
Mdh1NP_001303806.1 MDH_cytoplasmic_cytosolic 3..328 CDD:133421 216/325 (66%)
PTS1 353..355
Blue background indicates that the domain is not in the aligned region.

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