DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdh1 and Mdh2

DIOPT Version :9

Sequence 1:NP_001285803.1 Gene:Mdh1 / 34414 FlyBaseID:FBgn0262782 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_032643.2 Gene:Mdh2 / 17448 MGIID:97050 Length:338 Species:Mus musculus


Alignment Length:281 Identity:70/281 - (24%)
Similarity:105/281 - (37%) Gaps:86/281 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RVVVTGAAGQIAYSLLYMIARGEVFGKDQPIV--LHLLDIPPMVGV------------LEGVV-- 54
            :|.|.||:|.|...|..::       |:.|:|  |.|.||....||            ::|.:  
Mouse    26 KVAVLGASGGIGQPLSLLL-------KNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGP 83

  Fly    55 MELADCALPLLVEVVPTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKF 119
            .:|.||.....|.|:|                 ..:|||.||.|.||.:.|..|..|...|..:.
Mouse    84 EQLPDCLKGCDVVVIP-----------------AGVPRKPGMTRDDLFNTNATIVATLTAACAQH 131

  Fly   120 AKKDVKVLVVGNPANT----NALVCSSYAPSIPRENFSAMTRLDQNRATSQIAAKLGVPISAVKN 180
            . .:..|.::.||.|:    .|.|...:....|.:.| .:|.||..||.:.:|...|:..:.|..
Mouse   132 C-PEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIF-GVTTLDIVRANTFVAELKGLDPARVNV 194

  Fly   181 IIIWGNHSSTQYP------------------------DAG----QAKVTANGT-----------V 206
            .:|.|:...|..|                        :||    :||..|...           |
Mouse   195 PVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFV 259

  Fly   207 KSVVDAIN-DNGYLQGSFVET 226
            .|:|||:| ..|.::.|||::
Mouse   260 FSLVDAMNGKEGVVECSFVQS 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdh1NP_001285803.1 MDH_cytoplasmic_cytosolic 3..327 CDD:133421 70/281 (25%)
MDH_euk_cyt 6..328 CDD:130819 70/281 (25%)
Mdh2NP_032643.2 MDH_euk_gproteo 26..335 CDD:130833 70/281 (25%)
MDH_glyoxysomal_mitochondrial 26..334 CDD:133422 70/281 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.