DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment da and tcf3b

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_001166154.1 Gene:tcf3b / 664768 ZFINID:ZDB-GENE-051113-64 Length:652 Species:Danio rerio


Alignment Length:690 Identity:201/690 - (29%)
Similarity:284/690 - (41%) Gaps:218/690 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TGTVGADRGGGGGYHSPYGSLGVENGMYPSDF-----NSMHDT-VNGGNNRYANASTVDQYFDSA 86
            ||..|.:..|      ||.|.|.:.|..|||.     ::|..: :..|:          |::.|.
Zfish    91 TGISGKNERG------PYSSFGGQPGFLPSDIAIPSADAMSPSGLKSGS----------QFYPSY 139

  Fly    87 A------AGSGGAWCQPQ---------------MSSANSYMGQS-AYQNSGPLSGHSIDQQQQQV 129
            |      ...||...|||               .:|.:.|:..| ||..|.|.|.:.        
Zfish   140 ANNPRRRPSDGGMDPQPQKKIRKPPGLPSSVYAATSGDDYIRDSAAYPGSKPGSVYP-------- 196

  Fly   130 HQADGLGMGGGGGGGVGADGMHCPVTTGLPPISSFRP--TSGGIGGPGAGQQAPVNVNVNPPAVF 192
                        |.....:|:|          ||..|  .||.:|..|.......:.::|.||.|
Zfish   197 ------------GSFYMQEGLH----------SSSDPWAPSGSLGQSGYTAMLANSPHINQPASF 239

  Fly   193 N--SPQAHN----HNHTVQAQHSALSTAGPLGHHSLNHTPHAHSHTLPLPHALPHGHTLPHPHHS 251
            :  :||...    |...|...||..:               |:|||                   
Zfish   240 SAINPQDRMNYPLHGADVNGFHSGSA---------------AYSHT------------------- 270

  Fly   252 QQNSPAVQSSDAFSGAGASVKVAGAGNSSAAALRQQMYMPADQSISSFGSNPSTPVNSPPPLTQS 316
                .::..||:...:..:| .:.:|:....|| ..:| |:|.:.::|.|.|||||.||..:   
Zfish   271 ----SSINGSDSILASRGTV-ASSSGDEIGKAL-ASIY-PSDHNSNNFSSTPSTPVGSPQGI--- 325

  Fly   317 VVGGGGEPSVSGGSGWGHSVLNGGPSSSYASEMVPVSSLHTMASVFQGVRMEERLDDALNVLRNH 381
                     .:|.:.|..:......|.:|.      ..||.:.:     :||:||::|::|||:|
Zfish   326 ---------ATGATQWSRASGQAALSPNYE------GGLHALQN-----KMEDRLEEAIHVLRSH 370

  Fly   382 CEPE-------------MLAGVNQSLASIDNIDALTS--FVPNSPSHLGSGGNSGSVSNTSNAAL 431
            ...:             :|:.|:.|.||:.:|....|  .:|.|..|....|:    .:..:|.|
Zfish   371 AVGQAPGIPGAHADMHGLLSAVSTSSASMGSIPQAYSNAGLPLSNRHPAMAGS----HHDDHACL 431

  Fly   432 VHEVLALGAAAAAGTSGQSVGGAGSLASLKLDRSASTSLPKQTKKRKEHTAISNSVPAGVSTTSS 496
            ......|.:|.|:||  ...|||        ..:.:||                .:|.|::..:.
Zfish   432 PPSSTLLQSAHASGT--PQPGGA--------PEAFNTS----------------GLPGGLAHATH 470

  Fly   497 LTSLDISDTKPTSSIESSNSGL-----QQHSQGKGTKRPRRYCSS------------ADEDDDAE 544
              |.:.||.|.....:..||.:     ::..:.|...|||:...|            .:||||.|
Zfish   471 --SSNKSDIKREEKEDDENSSVADKSEEEKKESKPRTRPRKEVFSQVLSGVSDQGEDLNEDDDDE 533

  Fly   545 --PA-VKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQTKLGILNMAVEVIMT 606
              || ||..||||||.|||||||:|:||||||.|||||||..||.:|||||||.||:.||.||:.
Zfish   534 DLPAEVKVEREKERRVANNARERLRVRDINEAFKELGRMCQLHLSNDKPQTKLLILHQAVNVILN 598

  Fly   607 LEQQVRERNLNPKAACLKRREEEK-----AEDGPKLSAQH 641
            ||||||||||||||||||||||||     .:...:||..|
Zfish   599 LEQQVRERNLNPKAACLKRREEEKVSGVVGDTQMQLSGPH 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 39/52 (75%)
tcf3bNP_001166154.1 HLH 552..605 CDD:197674 39/52 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583914
Domainoid 1 1.000 85 1.000 Domainoid score I8119
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 207 1.000 Inparanoid score I3676
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D260626at33208
OrthoFinder 1 1.000 - - FOG0001459
OrthoInspector 1 1.000 - - otm24503
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11793
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4532
SonicParanoid 1 1.000 - - X1175
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1111.120

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