DRSC/TRiP Functional Genomics Resources

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Protein Alignment da and Msgn1

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_062417.1 Gene:Msgn1 / 56184 MGIID:1860483 Length:188 Species:Mus musculus


Alignment Length:245 Identity:51/245 - (20%)
Similarity:78/245 - (31%) Gaps:76/245 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 EMLAGVNQSLASIDNIDALTSFVPNS---PSHLGSGGNSGSVSNTSNAALVHEVLALGAAAAAGT 446
            |....:...|.|.|....|.|:...|   |..|.....:.|:|...:.....||     |...|.
Mouse     6 ETFLSLEDGLDSSDTAGLLASWDWKSRARPLELVQESPTQSLSPAPSLESYSEV-----ALPCGH 65

  Fly   447 SGQSVGGAGSLAS------LKLDRSASTSLPKQTKKRKEHTAISNSVPAGVSTTSSLTSLDISDT 505
            ||.|.||:....|      ::||.|.....|...     |||                       
Mouse    66 SGASTGGSDGYGSHEAAGLVELDYSMLAFQPPYL-----HTA----------------------- 102

  Fly   506 KPTSSIESSNSGLQQHSQGKGTKRPRRYCSSADEDDDAEPAVKAIREKERRQANNARERIRIRDI 570
                      .||:..   ||:|                  ||  ...:||:..:.||::|:|.:
Mouse   103 ----------GGLKGQ---KGSK------------------VK--MSVQRRRKASEREKLRMRTL 134

  Fly   571 NEALKEL-GRMCMTHLKSDKPQTKLGILNMAVEVIMTLEQQVRERNLNPK 619
            .:||..| ..:...:.:..:|.||:..|...::.|..|...:......|:
Mouse   135 ADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYIGELTDLLNSSGREPR 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 13/53 (25%)
Msgn1NP_062417.1 HLH 119..173 CDD:278439 14/53 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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