DRSC/TRiP Functional Genomics Resources

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Protein Alignment da and tcf12

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:XP_009301710.1 Gene:tcf12 / 407985 ZFINID:ZDB-GENE-040516-11 Length:726 Species:Danio rerio


Alignment Length:783 Identity:228/783 - (29%)
Similarity:307/783 - (39%) Gaps:269/783 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 DFNSMHD-TVNGGNNR-------YANASTVDQYFDSAAAGSGGAWCQPQMSSANSYMGQSAYQNS 114
            ||::|.. .||.|.||       ...||.:|:....|:..|||       .|:.|:.....:.:|
Zfish    21 DFSAMFSPPVNSGKNRPTTLGSSQFTASGMDERTSQASWASGG-------QSSPSFESSRGFADS 78

  Fly   115 GPLSGHSIDQ-QQQQVHQADGLG---------MG-------GGGGGGVGADGMHC---------- 152
                 |..|. ...::...:||.         ||       .|.|...|..|...          
Zfish    79 -----HYADHLSDSRLVSHEGLSPTPFMSSSIMGKSERPPFSGYGREPGVSGCQSNLRSDIQLAS 138

  Fly   153 --PVTT----------------------------------------GL----------------- 158
              ||||                                        ||                 
Zfish   139 PGPVTTPGKSPTPFYSYTGPNPRRRPLQDSASMDPLQTKKVRKPPPGLPTSVYAPSPSSEDFNRD 203

  Fly   159 --------PPISSFRPT--------------SGGIGGPGAGQQAPVNVNVNPPAVFNSPQAHNHN 201
                    ||.|.|..|              |.||..||.|.....:.:       :.||:.|::
Zfish   204 SPSYPSPKPPGSMFASTFFDGTHNSSDQWNLSNGISQPGYGGMLGGSSS-------HMPQSGNYS 261

  Fly   202 HTVQAQHSALSTAGPLGHHSLNHTPHAHSHT-----LPLPHALPHGHTLPHPHHSQQNSPAVQSS 261
            :.    ||         |..||:.||:.|.|     ||...:.........|..:..::|.|.::
Zfish   262 NL----HS---------HDRLNYPPHSVSPTDINASLPPMSSFHRSSASTSPFVTASHTPPVNTT 313

  Fly   262 DAFSGAGASVKVAGA---GNSSAAALRQQMYMPADQSISSFGSNPSTPVNSPPPL--------TQ 315
            :....|.......|:   |::...|| ..:|.| |.:.|||.|||||||.||.||        ..
Zfish   314 EGVMAAANRGNATGSSQTGDALGKAL-ASIYSP-DHTSSSFPSNPSTPVGSPSPLAVQAGAATAG 376

  Fly   316 SVVGGGGEPSVSGGSGWGHSVLNGGPSSSYASEMVPVSSLHTMAS-VFQGV-------------- 365
            :||...|....:|.:.|..:......|.||.      :|||::.: |.|.:              
Zfish   377 TVVTASGPAGRAGTTQWTRATGQAPSSPSYE------NSLHSLKNRVHQQLHEHLQDAMSFLKDV 435

  Fly   366 ---RME---ERLDDALNVLRNHCEPEMLA---GVNQSLASIDN--IDALTSFVP------NSPSH 413
               |||   :|||||::|||||......|   .::..|....|  |.|:.|..|      |..:.
Zfish   436 CESRMEDRLDRLDDAIHVLRNHAVGSTAALSNDIHSLLGQAHNGPISAIGSSFPSSGLVTNRTAQ 500

  Fly   414 LGS--GGNSGSVSNTSNAALVHEVLALGAAAAAGTSGQSVGG--------AGSLASLKLDRSAST 468
            :||  ...|||::|.:::||        .|:||.||...:..        ||.|||    :.|| 
Zfish   501 MGSVHREESGSLNNNNHSAL--------QASAAPTSSSELNHQADAFRAIAGVLAS----QVAS- 552

  Fly   469 SLPKQTKKRKEHTAISNSVPAGVSTTSSLTSLDISDTKPTSSIESSN-SGLQQHSQGKGTKRP-- 530
                               |.|:...:. ...|:.|:..:..::|.: |..:...|.:|:.||  
Zfish   553 -------------------PLGLKVENQ-DKDDMHDSHASDDLKSDDESDKRDMKQNRGSSRPSC 597

  Fly   531 RRYCSSADEDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQTKLG 595
            ...|||.:||:|..|..||.||:|||.|||||||:|:||||||.|||||||..||||:||||||.
Zfish   598 ELSCSSINEDEDLNPEQKAERERERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLL 662

  Fly   596 ILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAEDGPKLSAQHHMIPQPQQVGGTPGSSYHS 660
            ||:.||.||::||||||||||||||||||||||||                   |.|..|....:
Zfish   663 ILHQAVAVILSLEQQVRERNLNPKAACLKRREEEK-------------------VSGVSGDPQQA 708

  Fly   661 QPA 663
            .||
Zfish   709 HPA 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 40/52 (77%)
tcf12XP_009301710.1 HLH 627..680 CDD:197674 40/52 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583912
Domainoid 1 1.000 85 1.000 Domainoid score I8119
eggNOG 1 0.900 - - E1_KOG3910
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 207 1.000 Inparanoid score I3676
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D260626at33208
OrthoFinder 1 1.000 - - FOG0001459
OrthoInspector 1 1.000 - - otm24503
orthoMCL 1 0.900 - - OOG6_105744
Panther 1 1.100 - - LDO PTHR11793
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4532
SonicParanoid 1 1.000 - - X1175
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.790

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