DRSC/TRiP Functional Genomics Resources

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Protein Alignment da and hlh-16

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_492372.2 Gene:hlh-16 / 183973 WormBaseID:WBGene00001960 Length:146 Species:Caenorhabditis elegans


Alignment Length:151 Identity:29/151 - (19%)
Similarity:60/151 - (39%) Gaps:51/151 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   503 SDTKPTSSIESSNSGLQQHSQGKGTKRPRRYCSSADEDDDAEPAVKAIREKER---RQANNARER 564
            |::.|.:..|......::.|:..|.|:                 ::.:.|:|:   |.:.|:|||
 Worm     3 SESPPGAEEEFEPYVRRKRSEAGGRKK-----------------MQGLNEQEQNLLRNSINSRER 50

  Fly   565 IRIRDINEALKELGRMCMTH----------------LKSD----------KPQTKLGILNMAVEV 603
            .|:.::|:..:.| |.|:.:                |.|:          |.|.:|.:.|..::.
 Worm    51 RRMHELNDEFETL-RECLPYPNEANSRRMSKANTLLLASNWIKQLANANHKLQMELNMANAKIDS 114

  Fly   604 IMTLEQQVRERNLNPKAACLK 624
            :|...::|.:    |.:.|.|
 Worm   115 LMVQLKKVEK----PSSKCSK 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 17/78 (22%)
hlh-16NP_492372.2 bHLH_TS 42..96 CDD:381396 12/54 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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