DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment da and hlh-30

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_001023411.1 Gene:hlh-30 / 177157 WormBaseID:WBGene00020930 Length:524 Species:Caenorhabditis elegans


Alignment Length:595 Identity:127/595 - (21%)
Similarity:195/595 - (32%) Gaps:161/595 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 PHGHTLPHPHHSQQNSPAVQS--SDAFSGAGASVKVAGAGNSSAAALRQQMYMPADQSISSFGSN 302
            |.....|.....||...|.|.  .|....|.||....|||.|..........:|..|  .|.||.
 Worm    19 PRAQQPPGAQQQQQPQQAQQQFYDDEPYQANASQFRFGAGKSMEQRRETGNLIPIAQ--RSMGST 81

  Fly   303 PSTPVNSPPPLTQSVVGGGGEPSVSGGSGWG--------HSVL-------NGGPSSSYASEMVPV 352
             |||..|.|  |||..|||     |.|:...        |.:|       .|.|.|..:.::...
 Worm    82 -STPFGSAP--TQSYFGGG-----SSGAALSSPRKMQQTHQMLFGNIQPPRGSPPSDGSDKIHRF 138

  Fly   353 SSLHT---MASVFQGVRMEERLDDALNVLRNHCEPEMLAGVNQSLA-SIDNIDALTSFVPNSPSH 413
            ....|   :..|| |..:::.:.|.|..:.:  :..|..|..:.:. ..:...::...:|.:.|.
 Worm   139 GESPTPGGVGGVF-GTELDDLIIDELMGMED--DQRMRPGATRPMTIGGEKTMSMARPIPGASSR 200

  Fly   414 LGSGGNSGSVSNTSNAALVHEVLALGAAAAAGTSGQSVGGAGSLASLKLDRSASTSLPKQTKKRK 478
            .|| |:|||.....|                                                  
 Worm   201 AGS-GHSGSPITIPN-------------------------------------------------- 214

  Fly   479 EHTAISNSVPAGVSTTSSLTSLDISDTKPTSSIESSNSGLQQHSQGKGTKRPRRYCSSADEDDDA 543
               |:||:....||:::..:|:||.......|....|||        |...|..|          
 Worm   215 ---AMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGGNSG--------GDNDPEDY---------- 258

  Fly   544 EPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQTKLGILNMAVEVIMTL- 607
                  .|::.::..:|..||.|..:||:.:||||:|...:...|....|..||..:.:.|..| 
 Worm   259 ------YRDRRKKDIHNMIERRRRYNINDRIKELGQMLPKNTSEDMKLNKGTILKASCDYIRVLQ 317

  Fly   608 -----------EQQVRERNLNPKAACLKRREEEKAEDGPKLSAQH-----HMIPQP--QQV---- 650
                       :|:..|...:..|..:|..||..|..|.::...|     .:|.:|  |::    
 Worm   318 KDREQAMKTQQQQKSLESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIKQEIDESP 382

  Fly   651 -GGTPGSSYHSQPAQLVPPSSQT----ISTMTISLPVNQANNGLPPHLQQQQQQQSQLGHAQLPQ 710
             ..||..|:.|....|...::.|    |::...|.|.|..||..|      ......:|.|..|.
 Worm   383 PNHTPTGSFVSSSGFLSEVTNNTAAMQITSPNDSRPNNFMNNSAP------SDSFFSVGSASPPD 441

  Fly   711 XHAPPRNPFWK--SSSSLSSIKTE----------CIEGSAAKYSDNLELENQVLSNMFWRCRPPK 763
             ........||  .|::.|.:..:          .|..:.|..|.:.. .:|:..::.|..  ..
 Worm   442 YRTSSGTASWKLPGSNAFSDLMMDDLNPMMNGDPLISSAGAHPSPHFH-SSQMSPDIHWDA--SG 503

  Fly   764 LQPQPLQNVQ 773
            ..|.|:...|
 Worm   504 FSPDPINTQQ 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 18/64 (28%)
hlh-30NP_001023411.1 bHLHzip_MITF_like 260..328 CDD:381403 18/67 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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