DRSC/TRiP Functional Genomics Resources

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Protein Alignment da and hlh-2

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_001021581.1 Gene:hlh-2 / 172458 WormBaseID:WBGene00001949 Length:399 Species:Caenorhabditis elegans


Alignment Length:443 Identity:117/443 - (26%)
Similarity:188/443 - (42%) Gaps:104/443 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 PHAHSH-------TLPLPHALPHGHTLPHPHHSQQNSPAVQSSDAF------SGAGASVKVAGAG 277
            |:|:.:       |:.:|......|..|:|   ...:..:..|.||      :...|||   .|.
 Worm    27 PNAYDYPYNIDPTTIQMPDYWSGYHLNPYP---PMQTTDIDYSSAFLPTHPPTETPASV---AAP 85

  Fly   278 NSSAAALRQQMYMPADQSISSFGSNPSTPVNSPPPL-TQSVVGGGGEPSVSGGSGWGHSVLNGGP 341
            .|:.:.::     |...:.|:..:.|||   :|.|. |..|:......:.:..|....:::...|
 Worm    86 TSATSDIK-----PIHATSSTSTTAPST---APAPTSTTDVLELKPTTAPATNSAETSAIVAPQP 142

  Fly   342 SSSYASEMVPVSSLHTMASVFQGV---RMEERLDDALNVLRNHCEPEMLAGVNQSLASIDNIDAL 403
            .::..:.:..:||::|....:.|.   ..:.:..:|:|...: ..|....|.:.|:|...:....
 Worm   143 LTNLTAPIDAMSSMYTWPQTYPGYLPPSEDNKASEAVNPYIS-IPPTYTFGADPSVADFSSYQQQ 206

  Fly   404 TSFVPNSPSHLGSGGNSGSVSNTSNAALVHEVLALGAA------AAAGTSGQSVGGAGSLASLKL 462
            .:..||     |.||::..|...      |:....|.:      ...|.:|...|.:.|  |::.
 Worm   207 LAGQPN-----GLGGDTNLVDYN------HQFPPAGMSPHFDPNGYPGMTGMPPGSSAS--SVRN 258

  Fly   463 DRSASTSLPKQTKKRKEHTAISNSVPAGVSTTSSLTSLDISDTKPTSSIESSNSGLQQHSQGKGT 527
            |:|||    :.|.:|:.....|:.:|...|::|.|               |.|..:         
 Worm   259 DKSAS----RATSRRRVQGPPSSGIPTRHSSSSRL---------------SDNESM--------- 295

  Fly   528 KRPRRYCSSADEDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTH-LKSDKPQ 591
                    |.|:|.|            ||..||||||:|:||||.|.|||||||..| ..:::.|
 Worm   296 --------SDDKDTD------------RRSQNNARERVRVRDINSAFKELGRMCTQHNQNTERNQ 340

  Fly   592 TKLGILNMAVEVIMTLEQQVRERNLNPKA-ACLKRREEE---KAEDGPKLSAQ 640
            ||||||:.||.||..||:|||:||:|||. |.:||:.::   |..|....|||
 Worm   341 TKLGILHNAVSVITQLEEQVRQRNMNPKVMAGMKRKPDDDKMKMLDDNAPSAQ 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 34/53 (64%)
hlh-2NP_001021581.1 bHLH_E-protein_E47-like 297..368 CDD:381513 44/82 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159476
Domainoid 1 1.000 66 1.000 Domainoid score I6570
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001459
OrthoInspector 1 1.000 - - oto19912
orthoMCL 1 0.900 - - OOG6_105744
Panther 1 1.100 - - LDO PTHR11793
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4532
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.960

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