DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment da and Tcf3

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_598208.2 Gene:Tcf3 / 171046 RGDID:620914 Length:649 Species:Rattus norvegicus


Alignment Length:725 Identity:219/725 - (30%)
Similarity:296/725 - (40%) Gaps:219/725 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 DFNSMHD-TVNGGNNRYANASTVDQYFDSAAAGSG-------GAWCQPQMSSANSYMGQSAYQNS 114
            ||:.|.. .|..|..|.|:.:      .:..||||       |:|       .||....|::..|
  Rat    22 DFSMMFPLPVANGKGRPASLA------GTQFAGSGLEDRPSSGSW-------GNSEQNSSSFDPS 73

  Fly   115 GPLS-GHSIDQQQQQVHQADGLGMGGGGGGG-------VGADGMHCPVTTGLPPISSFRPTSGGI 171
            ...| |.........:..:..||.|.||.|.       .|.|     .:.|....:.|.|...|:
  Rat    74 RAYSEGAHFSDSHSSLPPSTFLGAGLGGKGSERNAYATFGRD-----TSVGTLSQAGFLPGELGL 133

  Fly   172 GGPG----AGQQA------------------------PVNVNVNPP----AVFNSPQAHNHNHTV 204
            ..||    :|.::                        |..|...||    :|:.|....|::...
  Rat   134 SSPGPLSPSGVKSSSQYYTSFPSNPRRRAADGGLDTQPKKVRKVPPGLPSSVYPSSSGDNYSRDA 198

  Fly   205 QAQHSAL--STAGPLGHHSLNHTPHAHSHTLPLPHALPHGHTL-----PHP-------------- 248
            .|..||.  |:|.|...:..:.:.|..:.....|..:..|..|     |.|              
  Rat   199 TAYPSAKTPSSAYPSPFYVADGSLHPSAELWSPPGQVGFGPMLGDGSAPLPLAPGSSSVSSGAFG 263

  Fly   249 ------------HHSQQNS--PAVQSSDA----FSG-AGASVKVAGA----------GNSSAAAL 284
                        |.|:.|.  |||.|..|    :|| :|.:..|:||          .:||..||
  Rat   264 GLQQQDRMGYQLHGSEVNGTLPAVSSFSAAPGTYSGTSGHTPPVSGADSLLGTRGTTASSSGDAL 328

  Fly   285 RQ---QMYMPADQSISSFGSNPSTPVNSPPPLTQSVVGGGGEPSVSGGSGWGHSVLNGGPSS--- 343
            .:   .:|.| |.|.::|..:|||||.||..|             .|.|.|..:   |.||:   
  Rat   329 GKALASIYSP-DHSSNNFSPSPSTPVGSPQGL-------------PGTSQWPRA---GAPSALSP 376

  Fly   344 SYASEMVPVSSLHTMASVFQGVRMEERLDDALNVLRNHCEPEMLAGVNQSLASI--DNIDALTSF 406
            :|.      :.||.::      :||:|||:|::|||:|.     .|....|..:  .:....|||
  Rat   377 NYD------AGLHGLS------KMEDRLDEAIHVLRSHA-----VGTASELHGLLPGHSTLTTSF 424

  Fly   407 VPNSPSHLGSGGNSGSVSN-------TSNAALVHEVLALGAAAAAGTSGQSVGGAGSLASLKLDR 464
            .  .|..|| |.::|.||.       ||.|:|:|                      :.|||.   
  Rat   425 A--GPMSLG-GRHAGLVSGSHPEDGLTSGASLLH----------------------NHASLP--- 461

  Fly   465 SASTSLPKQTKKRKEHTAISNSVPAGVSTTSSLTSLDISDTKPTSSIESSNSGLQQHSQGKGTKR 529
            |..:|||..:::..:  :.|....|||:..:|....:..:.:..:|:..:      ....|..|.
  Rat   462 SQPSSLPDLSQRPPD--SFSGLGRAGVTAGASEIKREEKEDEEVTSVADA------EEDKKDLKV 518

  Fly   530 PR-RYCSSADEDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQTK 593
            || |.....||||...|..||.||||||.|||||||:|:||||||.|||||||..||.::|||||
  Rat   519 PRTRTSPDEDEDDLLPPEQKAEREKERRVANNARERLRVRDINEAFKELGRMCQLHLSTEKPQTK 583

  Fly   594 LGILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAE---DGPK--LSAQHHMIPQPQQVGGT 653
            |.||:.||.||::||||||||||||||||||||||||..   ..|:  |||.|            
  Rat   584 LLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSGVVGDPQLALSAAH------------ 636

  Fly   654 PGSSYHSQPA 663
            ||......||
  Rat   637 PGLGEAHNPA 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 38/52 (73%)
Tcf3NP_598208.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 37..107 20/82 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 132..207 14/74 (19%)
Nuclear localization signal. /evidence=ECO:0000255 171..177 2/5 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 296..325 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 339..376 17/52 (33%)
Leucine-zipper 385..420 12/45 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 435..547 38/144 (26%)
HLH 550..603 CDD:197674 38/52 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343664
Domainoid 1 1.000 86 1.000 Domainoid score I7894
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 210 1.000 Inparanoid score I3581
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D260626at33208
OrthoFinder 1 1.000 - - FOG0001459
OrthoInspector 1 1.000 - - otm44834
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11793
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1175
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1111.000

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