DRSC/TRiP Functional Genomics Resources

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Protein Alignment da and tcf12

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:XP_004912760.1 Gene:tcf12 / 100188922 XenbaseID:XB-GENE-5799694 Length:716 Species:Xenopus tropicalis


Alignment Length:743 Identity:228/743 - (30%)
Similarity:324/743 - (43%) Gaps:161/743 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 FQNCFNKIANK---QPTGTVGADRGGGGGYHSPYG-SLGVENGMYPSDFNSMHDTVNGGNNRYAN 75
            |...|:...|.   :|| |:|:.:..|.|.....| |.|....:.||..:|...|   .:..|: 
 Frog    36 FHTMFSPPVNSGKTRPT-TLGSSQFSGSGMDERSGASWGTSGQLSPSYESSRGFT---DSPHYS- 95

  Fly    76 ASTVDQYFDSAAAGSGGAWCQPQMSSANSYMGQSAYQNSGPLSGH--SIDQQQQQVHQADGLGMG 138
                |...||......|....|.|:|  :.||:::.:...||.|.  ::...|..:.:|| :|:|
 Frog    96 ----DHLNDSRLGPHEGLSPTPFMNS--NLMGKTSDRGPFPLFGRDSAVPGCQPGLVRAD-IGLG 153

  Fly   139 GGG----GGGVG--------ADGMHCPV--TTGLPPISSFR--------PTSGGIGGPGA---GQ 178
            ..|    .|..|        :.....|:  |..|.|:.:.:        |:|.....|.:   .:
 Frog   154 SSGQLPSSGKPGSPYFPFSASSSRRRPLQDTPALDPVQTKKIRKVPPGLPSSVYAPSPNSDDFNR 218

  Fly   179 QAPVNVNVNPPA------------VFNSPQAHNHNHTVQ---------AQHSALSTAGPLG--HH 220
            ::|...:..||:            ..||.:..|.::.:.         :..|.:|.:...|  |.
 Frog   219 ESPSYPSPKPPSSMFASTFFLQDGTHNSSELWNSSNGISQPGYGGMLGSSSSHMSQSSSFGSLHD 283

  Fly   221 SLNHTPHAHSHT-----LPLPHALPHGHTLPHPHHSQQNSPAVQSSDAFSG-----AGASVKVAG 275
            .||:.||..|.|     ||...:...|......:.:..::|.:..||...|     ||:|.....
 Frog   284 RLNYPPHPVSPTDINASLPPMSSFHRGGNSSSTYVAASHTPPINGSDNLLGNRGNAAGSSQTGDA 348

  Fly   276 AGNSSAAALRQQMYMPADQSISSFGSNPSTPVNSPPPLTQSVVGGGGEPSVSGGSGWGHSVLNGG 340
            .|.:.|:     :|.| |.:.|||.||||||..||.||             .|.:.|...   ||
 Frog   349 LGKALAS-----IYSP-DHTSSSFPSNPSTPGGSPSPL-------------PGANQWSRP---GG 391

  Fly   341 --PSS-SYASEMVPVSSLHTMAS-------------------VFQGVRME---ERLDDALNVLRN 380
              ||| ||.      :|||::.:                   |.:..|||   :|||||::||||
 Frog   392 QTPSSPSYE------NSLHSLKNRVEQQLHEHLQDAMSFLKDVCEQSRMEDRLDRLDDAIHVLRN 450

  Fly   381 HCEPEMLAGVNQSLASIDNIDALTSFVPNSP--SHLGSGGNSGSVSNTSNAALVHEVLALGAAAA 443
            |.     .|.:.|:|:  :|.:|.....|.|  |...:.|.:|.|:|:...::  :|......:.
 Frog   451 HA-----VGPSTSMAA--DIHSLLGAAHNGPIASLTSNYGTAGLVANSRQTSM--QVANHREESV 506

  Fly   444 AGTSGQSVGGAGSLASLKLDRSASTSLPKQTKKRKEHTAISNSVPAGVSTTSSLTSLDI----SD 504
            :.:|..||          |..:.|.|.|:.|.|.:|:....:.|....|..|:|..:..    .|
 Frog   507 SISSEHSV----------LSSTVSASNPEITHKPQENYRALSGVLTAQSVISNLAEIKTEHKEKD 561

  Fly   505 TKPTSSIESSNSGLQQHSQGKGTKRPRRYCSSADEDDDAEPAVKAIREKERRQANNARERIRIRD 569
            ......:.|.:......|..|..|..|...||.:||:|..|..|..||||||.|||||||:|:||
 Frog   562 ENIHDGVSSDDMKSDDESSQKDFKSSRGRTSSINEDEDLNPEQKLEREKERRMANNARERLRVRD 626

  Fly   570 INEALKELGRMCMTHLKSDKPQTKLGILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAEDG 634
            ||||.|||||||..||||:||||||.||:.||.||:.||||||||||||||||||||||||..  
 Frog   627 INEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILNLEQQVRERNLNPKAACLKRREEEKVS-- 689

  Fly   635 PKLSAQHHMIPQPQQVGGTPGSSYHSQP 662
             .:||:    |.....|..||.:..:.|
 Frog   690 -AVSAE----PPNTHPGAHPGLTDTTNP 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 40/52 (77%)
tcf12XP_004912760.1 bHLH_E-protein_TCF4_E2-2 605..689 CDD:381515 68/83 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8128
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 208 1.000 Inparanoid score I3593
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D260626at33208
OrthoFinder 1 1.000 - - FOG0001459
OrthoInspector 1 1.000 - - otm47878
Panther 1 1.100 - - LDO PTHR11793
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4532
SonicParanoid 1 1.000 - - X1175
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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