DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment da and tcf3

DIOPT Version :9

Sequence 1:NP_001356956.1 Gene:da / 34413 FlyBaseID:FBgn0267821 Length:775 Species:Drosophila melanogaster
Sequence 2:XP_031753734.1 Gene:tcf3 / 100101779 XenbaseID:XB-GENE-478265 Length:706 Species:Xenopus tropicalis


Alignment Length:639 Identity:180/639 - (28%)
Similarity:253/639 - (39%) Gaps:178/639 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TGTVGADRGGGGGYHSPYGSLGVENGM-------YPSDF---------------NSMHDTVNGGN 70
            :|.||.:.      ..||.:.|.::||       .|.|.               .|.:.|....:
 Frog   101 SGLVGKNE------RPPYSTFGRDSGMAMNQTGFLPGDLAMNSPSALSPNAGKAGSQYYTYPNNS 159

  Fly    71 NRYANASTVDQYFDSA----------------AAGSGGAWCQPQMSSANSYMGQSAYQNSGPLSG 119
            .|....|.:.:..|:.                .|.||..:|..:.|.||.....|.|.       
 Frog   160 RRRPGDSNLGKKTDAQPKKVRKVPPGLPSSVYPANSGDEYCGDRGSYANPKAPNSVYP------- 217

  Fly   120 HSIDQQQQQVHQADGLGMGGGGGGGVGADGMHCPVTTGLPPISSFRPTSGGIGGPGAGQQAPVNV 184
                                  |.....||:|..        |....:|||||..|..       
 Frog   218 ----------------------GAFYMTDGLHSS--------SDIWASSGGIGQGGYS------- 245

  Fly   185 NVNPPAVFNSPQAHNHNHTVQAQHSALSTAGPLGHHSLNHTPH------AHSHTLPLPHALPHGH 243
                 :|.||.|:              |.:...|..||:  ||      .||..:. |.......
 Frog   246 -----SVLNSSQS--------------SVSQTTGFSSLH--PHERMGFPMHSGEVN-PSVTSSFS 288

  Fly   244 TLPHPHHSQQNSPAVQSSDAFSGAGASVKVAGAGNSSAAALRQQMYMPADQSISSFGSNPSTPVN 308
            |.|..:....::|.:.|.|...| ........:|::...|| ..:|.| |.|.::|.|.|||||.
 Frog   289 TTPAQYGVSSHTPPISSGDTMIG-NRGTATGSSGDALGKAL-ASIYSP-DHSSTNFSSTPSTPVG 350

  Fly   309 SPPPLTQSVVGGGGEPSVSGGSGWGHSVLNGGPSSSYASEMVPVSSLHTMASVFQGVRMEERLDD 373
            ||    |.:.|.|..|..||         .|..|.||.      .:|||:.:     :||:|||:
 Frog   351 SP----QGITGSGQWPRASG---------PGALSPSYD------GTLHTLQN-----KMEDRLDE 391

  Fly   374 ALNVLRNHC--EPEMLAGVNQSLASIDNIDALTSFVPNSPSHLGSGGNSG--SVSNTSNAALVHE 434
            |::|||:|.  :...|.|.::.:.|:.:..|         |.||||..:.  |::|..:....|.
 Frog   392 AIHVLRSHAVGQTGSLPGGHEDIHSLLSATA---------SVLGSGFPAAVLSLANRHSMLNSHT 447

  Fly   435 VLALGAAAAAGTSGQSV-GGAGSLASLKLDRSASTSLPKQTKKRKEHTAISNSVPAGVSTTSSLT 498
            ..||.:|:....|..:| ...|||..|...:.:.:.||          .:..:||.|.:......
 Frog   448 EEALPSASNMLHSQVTVPAQPGSLPDLTRPQDSYSGLP----------GLGRAVPPGRAPEIKRE 502

  Fly   499 SLDISDTKPTSSIESSNSGLQQHSQGKGTKRPRRYCS-----SADEDDDAEPAVKAIREKERRQA 558
            |.:..:.:....:..     .:..:.| |:|.|..||     ..:|||:..|..||.||||||.|
 Frog   503 SKEDEENRSVGDLSD-----DEKKESK-TQRSRTRCSINSQDEDEEDDNLPPEQKAEREKERRVA 561

  Fly   559 NNARERIRIRDINEALKELGRMCMTHLKSDKPQTKLGILNMAVEVIMTLEQQVR 612
            ||||||:|:||||||.|||||||..||.|:||||||.||:.||.||::||||||
 Frog   562 NNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILSLEQQVR 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daNP_001356956.1 HLH 560..613 CDD:197674 40/53 (75%)
tcf3XP_031753734.1 bHLH_SF 557..617 CDD:412148 45/59 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8128
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 208 1.000 Inparanoid score I3593
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D260626at33208
OrthoFinder 1 1.000 - - FOG0001459
OrthoInspector 1 1.000 - - otm47878
Panther 1 1.100 - - O PTHR11793
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1175
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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