DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk1 and cdkl5

DIOPT Version :10

Sequence 1:NP_476797.1 Gene:Cdk1 / 34411 FlyBaseID:FBgn0004106 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001139240.1 Gene:cdkl5 / 559341 ZFINID:ZDB-GENE-081022-110 Length:1080 Species:Danio rerio


Alignment Length:305 Identity:115/305 - (37%)
Similarity:178/305 - (58%) Gaps:27/305 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIREISLLKELKHENIVC 65
            |..||.:..:|||.||||.|.|::.|.::||:||.:...::|.|..|.:||:.:|:.||.:|||.
Zfish    10 MNKFEVLGIVGEGAYGVVLKCRHKETKELVAIKKFKDSEENEEVKETTLRELKMLRTLKQDNIVE 74

  Fly    66 LEDVLMEENRIYLIFEFLSMDLKKYMDSLP----VDKHMESELVRSYLYQITSAILFCHRRRVLH 126
            |::......::||:||::..::.:.::.||    .||      ||||::|:..||.:||:..::|
Zfish    75 LKEAFRRRGKLYLVFEYVEKNMLELLEELPNGALPDK------VRSYIFQLIKAIHWCHKNEIVH 133

  Fly   127 RDLKPQNLLIDKSGLIKVADFGLGR--SFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWS 189
            ||:||:||||..:.::|:.|||..|  |.|.... ||..:.|.|||:||:|||:| |...||:||
Zfish   134 RDIKPENLLISANDILKLCDFGFARNLSEGSDAN-YTEYVATRWYRSPELLLGAP-YGKAVDMWS 196

  Fly   190 IGCIFAEMATRKPLFQGDSEIDQLFRMFRIL-KTPTEDIW-----PGVTSLPDYKNTFPCWSTNQ 248
            :|||..|::..:|||.|:|||||||.:.::| ..|.|.:.     |....|     .||..|..|
Zfish   197 VGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPPEQMKLFYSNPRFAGL-----RFPSVSHPQ 256

  Fly   249 LTNQLKNLDANG--IDLIQKMLIYDPVHRISAKDILEHPYFNGFQ 291
            ..::......||  :||::.:|..:|..|...:..|.||.|.|.:
Zfish   257 TLDRRYLGIINGLMLDLMKNLLCLNPTERFLTEQCLNHPVFQGLR 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk1NP_476797.1 STKc_CDK1_euk 3..287 CDD:270845 112/297 (38%)
cdkl5NP_001139240.1 STKc_CDKL5 11..297 CDD:270838 112/298 (38%)

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