Sequence 1: | NP_723576.1 | Gene: | CG5096 / 34410 | FlyBaseID: | FBgn0032235 | Length: | 491 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510425.2 | Gene: | let-4 / 181554 | WormBaseID: | WBGene00002282 | Length: | 773 | Species: | Caenorhabditis elegans |
Alignment Length: | 406 | Identity: | 96/406 - (23%) |
---|---|---|---|
Similarity: | 150/406 - (36%) | Gaps: | 118/406 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 81 NVVFKTINLEHNNLTSVPI-----LP---KYDVEN-----------------LY---LANNQIDS 117
Fly 118 ISVGAFQNL-TELVTLDLSHNRLTSKVLVP-DVFKGPFTVQ---------------DFESLENLK 165
Fly 166 TLNLGYNDLHSLDADLFEHIPHIEELVLCSNSFHVIDQLSETAISGLQSLKILDVSYMEIDDLPD 230
Fly 231 TILHGPRDLEIFIAAGNLFNQLPKALKYATNLTSLVLNENPIENLIGDNVFPPLTKLTHLSMTFM 295
Fly 296 SKLYKIGPGAFSELQSLTELILSDNKLLNEIDEEALSKNVTGGQYLDYPPLEKVYLNNCNVSTLP 360
Fly 361 KELLVRWDKLKALDLRFNPWNCDESNDFL--INVLIDRINKT----TPVLAKDVKCGGPNKLNDV 419
Fly 420 TLLRVANEHMIESSTG 435 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG5096 | NP_723576.1 | LRR_RI | 69..378 | CDD:238064 | 80/341 (23%) |
leucine-rich repeat | 85..104 | CDD:275380 | 7/26 (27%) | ||
LRR_8 | 105..174 | CDD:290566 | 27/105 (26%) | ||
leucine-rich repeat | 105..128 | CDD:275380 | 11/43 (26%) | ||
leucine-rich repeat | 129..163 | CDD:275380 | 11/49 (22%) | ||
LRR_8 | 163..222 | CDD:290566 | 17/58 (29%) | ||
leucine-rich repeat | 164..187 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 188..214 | CDD:275380 | 5/25 (20%) | ||
leucine-rich repeat | 215..238 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 239..261 | CDD:275380 | 1/21 (5%) | ||
LRR_8 | 260..322 | CDD:290566 | 13/61 (21%) | ||
leucine-rich repeat | 262..286 | CDD:275380 | 5/23 (22%) | ||
leucine-rich repeat | 287..311 | CDD:275380 | 3/23 (13%) | ||
leucine-rich repeat | 346..369 | CDD:275380 | 3/22 (14%) | ||
leucine-rich repeat | 370..388 | CDD:275380 | 5/17 (29%) | ||
let-4 | NP_510425.2 | leucine-rich repeat | 66..86 | CDD:275380 | |
LRR_RI | <71..275 | CDD:238064 | 46/171 (27%) | ||
LRR_8 | 88..146 | CDD:290566 | 11/36 (31%) | ||
leucine-rich repeat | 88..111 | CDD:275380 | 1/1 (100%) | ||
leucine-rich repeat | 112..135 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 136..160 | CDD:275380 | 2/23 (9%) | ||
LRR_8 | 156..220 | CDD:290566 | 19/66 (29%) | ||
leucine-rich repeat | 161..184 | CDD:275380 | 10/22 (45%) | ||
leucine-rich repeat | 186..209 | CDD:275380 | 8/25 (32%) | ||
leucine-rich repeat | 210..257 | CDD:275380 | 11/46 (24%) | ||
LRR_RI | <250..411 | CDD:238064 | 46/223 (21%) | ||
LRR_8 | 256..316 | CDD:290566 | 18/85 (21%) | ||
leucine-rich repeat | 258..281 | CDD:275380 | 5/25 (20%) | ||
leucine-rich repeat | 282..305 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 306..328 | CDD:275380 | 9/71 (13%) | ||
LRR_8 | 327..387 | CDD:290566 | 18/69 (26%) | ||
leucine-rich repeat | 329..350 | CDD:275380 | 8/30 (27%) | ||
leucine-rich repeat | 353..400 | CDD:275380 | 10/46 (22%) | ||
leucine-rich repeat | 356..376 | CDD:275380 | 2/19 (11%) | ||
leucine-rich repeat | 401..419 | CDD:275380 | 3/17 (18%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR45617 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.100 |