DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr19 and dscama

DIOPT Version :9

Sequence 1:NP_001260336.1 Gene:dpr19 / 34408 FlyBaseID:FBgn0032233 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:376 Identity:79/376 - (21%)
Similarity:127/376 - (33%) Gaps:106/376 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GGLAILPCVVKVNSPATVSWIRRK-----DFQLLTVGLSTHSSDKRFLVEHTRHMGHWSLRIKAV 114
            |...||.|........|:.|...|     .||.:.:       :..|.|:   .:|:.||.||.|
Zfish   705 GKSVILNCSADGEPRPTIEWKYSKGAGVPQFQPIAL-------NSGFRVQ---LLGNGSLLIKHV 759

  Fly   115 REEDRGFYECQLS----IYPTQSIVIELKIVEAVAEISSAPELHIDETSTLRLECKLKRATENPA 175
            .|||.|:|.|::|    ...::|:.:.:||   .|.|:|.|...: .|...::|...|...|.|.
Zfish   760 LEEDAGYYLCKVSNDVGADVSKSMYLNVKI---PAMITSYPNNSL-ATKGEKIEMSCKAHGEKPI 820

  Fly   176 FVFWYHD------SKMINYDS-QGGFVVTSIGQSNPQSGQFY----RSSPANKSRATMPMESSNG 229
            .|.|..:      |.|||.|. :....|.::|.....:.|.|    ..|......|........|
Zfish   821 MVRWEKEVEKEKQSHMINPDMWRHTVTVKNVGDEVVSTLQIYPTMREDSGFFSCHAINSYGEDRG 885

  Fly   230 VL---------------------------------NSLLGSSDAIKAP--------AANVPSSTP 253
            :|                                 |||:...| |:..        |......:|
Zfish   886 ILQLTVQEPPEPPKVEIREVKERTIALRWTMGFDGNSLITGYD-IECKNKTETWERARRTRDVSP 949

  Fly   254 YMTQQHQSAYLLNPSVSVLTVKQVNFRHAGNYTCAPSN------------ARPASITVHVLRGEK 306
            .:.|  .:...|:|| |...::.....|.|:  ..|||            ..|..:|:..:..:.
Zfish   950 TLNQ--ATIIELHPS-STYNIRMFAKNHIGD--SEPSNELTVTTDEADPEGPPQDVTLEAITSQS 1009

  Fly   307 -----TAAMQHANRSIL--------DTETNGNGTFGLITLGGLNGTSGVTL 344
                 .|.::|....::        :..|||:..|..|::.....|..::|
Zfish  1010 IKVTWKAPLKHLQNGVIRGYQVCHREHSTNGSHQFVCISVEATGETESLSL 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr19NP_001260336.1 IG_like 50..127 CDD:214653 23/76 (30%)
IGc2 55..125 CDD:197706 22/74 (30%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142
I-set 236..311 CDD:254352
IG_like 321..402 CDD:214653
I-set 408..502 CDD:333254
IGc2 524..579 CDD:197706
Ig 614..679 CDD:319273
Ig_DSCAM 708..787 CDD:143211 24/88 (27%)
Ig 805..898 CDD:325142 19/92 (21%)
FN3 894..988 CDD:238020 17/99 (17%)
FN3 995..1092 CDD:238020 11/66 (17%)
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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