DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr19 and Hmcn1

DIOPT Version :9

Sequence 1:NP_001260336.1 Gene:dpr19 / 34408 FlyBaseID:FBgn0032233 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001258221.1 Gene:Hmcn1 / 289094 RGDID:1564772 Length:5635 Species:Rattus norvegicus


Alignment Length:513 Identity:96/513 - (18%)
Similarity:153/513 - (29%) Gaps:180/513 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FLLLLSSTFSDVGKITSSQNHFGNTLQSQFN--------------TKNNTRVIAQKGGLAILPCV 63
            ||.:..:..||....|...::...|.:..|:              |.::.:|:.  |...:|.|.
  Rat  1602 FLHIPRAQVSDSATYTCHASNVAGTAEKSFHVDIYVPPIIEGDLTTPSSKQVVV--GQSLVLECK 1664

  Fly    64 VKVNSPATVSWIRRKDFQLLTVGLSTHSSDKRFLVEHTRHMGHWSLRIKAVREEDRGFYEC-QLS 127
            ...|.|..::|:  ||      |:...:||...:     ..|...|.|.:..|.|||.|.| ..|
  Rat  1665 AVGNPPPVLTWL--KD------GVPVKASDNIHI-----EAGGKKLEILSALEVDRGQYICVATS 1716

  Fly   128 IYPTQSIVIELKIVEAVAEISSAPELHIDETS--------TLRLECKLKRATENPAFVFWYHDSK 184
            :...:.|..|:.::...|....      ||||        .|.|:|::..:.  |..:.|....:
  Rat  1717 VAGEREIKYEVDVLVPPAVEGG------DETSYFIVLANNLLELDCQVSGSP--PPTIMWLKGGQ 1773

  Fly   185 MINYDSQGGF------------------------VVTSI-------------------------- 199
            :|  |.:.||                        |.|::                          
  Rat  1774 LI--DERDGFKILLSGRKLVIAQAQVSDTGLYQCVATNVAGDRRKEFEVTVHVPPTIKSSDLPEK 1836

  Fly   200 ---------------GQSNPQSGQFYRSSPANKSRATMPMESSNGVL---NSLLGSSDAIKAPAA 246
                           |..||.........|.|.:...:.::||..||   .:||..:......|.
  Rat  1837 TVVRYKPVSLQCIANGIPNPSITWLKDDQPVNTAPGNLRIQSSGRVLQIAKALLEDAGRYTCVAT 1901

  Fly   247 NVPSSTPYMTQQH--------QSAYLLNPSV---------------------------------- 269
            |........||.|        ....:||.||                                  
  Rat  1902 NAAGEAHQHTQLHVHEPPSLDDGGKMLNESVVVNNPIQLECKATGSPVPVLTWYKDSHPLAGSTS 1966

  Fly   270 -------SVLTVKQVNFRHAGNYTCAPSNARPA-----SITVHV---LRGEKTAAMQHANR-SIL 318
                   .:|.:.......||.|.|...|:..|     |:.|||   :.|..:......|. :.|
  Rat  1967 ATFLKRGQILEIGSAQISDAGIYKCVAINSAGATELFYSLQVHVPPSISGSSSMVEVVVNNLARL 2031

  Fly   319 DTETNGNGTFGLITLGGLNGTSGVTLAGGILYFSG--LFLLMGAVVFD--RFSLAATH 372
            :.|..|.....|..|  .:|:...:.:.||...||  :..|..|.:.|  |::..|.:
  Rat  2032 ECEARGIPAPSLTWL--KDGSPVSSFSNGIQVLSGGRILALTSAQMSDTGRYTCVAVN 2087

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr19NP_001260336.1 IG_like 50..127 CDD:214653 21/77 (27%)
IGc2 55..125 CDD:197706 20/70 (29%)
Hmcn1NP_001258221.1 VWA_2 42..212 CDD:290253
I-set 520..608 CDD:254352
ig 524..606 CDD:278476
I-set 612..696 CDD:254352
Ig 626..696 CDD:299845
I-set 702..789 CDD:254352
Ig 716..789 CDD:299845
Ig 792..884 CDD:299845
IG_like 799..884 CDD:214653
I-set 890..977 CDD:254352
IGc2 903..967 CDD:197706
Ig 980..1071 CDD:299845
IG 994..1068 CDD:214652
I-set 1085..1167 CDD:254352
Ig 1086..1167 CDD:299845
I-set 1171..1258 CDD:254352
Ig 1188..1255 CDD:143165
Ig 1261..1357 CDD:299845
I-set 1267..1355 CDD:254352
I-set 1368..1448 CDD:254352
Ig 1380..1448 CDD:299845
IG 1460..1541 CDD:214652
IGc2 1470..1532 CDD:197706
IG_like 1557..1633 CDD:214653 7/30 (23%)
Ig 1565..1632 CDD:143165 6/29 (21%)
I-set 1645..1729 CDD:254352 25/98 (26%)
Ig 1648..1725 CDD:299845 23/91 (25%)
I-set 1752..1822 CDD:254352 11/73 (15%)
Ig 1754..1815 CDD:299845 10/64 (16%)
IG 1834..1915 CDD:214652 15/80 (19%)
IGc2 1843..1905 CDD:197706 13/61 (21%)
IG_like 1929..2008 CDD:214653 11/78 (14%)
IGc2 1935..1998 CDD:197706 6/62 (10%)
I-set 2012..2100 CDD:254352 17/78 (22%)
Ig 2021..2092 CDD:299845 16/69 (23%)
I-set 2111..2191 CDD:254352
IGc2 2119..2181 CDD:197706
I-set 2203..2286 CDD:254352
IGc2 2210..2276 CDD:197706
Ig 2299..2380 CDD:299845
IG_like 2300..2380 CDD:214653
I-set 2392..2474 CDD:254352
IGc2 2400..2464 CDD:197706
I-set 2478..2567 CDD:254352
IGc2 2493..2557 CDD:197706
I-set 2582..2663 CDD:254352
IGc2 2594..2653 CDD:197706
I-set 2681..2762 CDD:254352
Ig 2688..2762 CDD:299845
IG_like 2789..2865 CDD:214653
IGc2 2791..2855 CDD:197706
I-set 2879..2960 CDD:254352
Ig 2879..2950 CDD:299845
IG 2972..3052 CDD:214652
IGc2 2982..3042 CDD:197706
IG 3069..3147 CDD:214652
IGc2 3073..3137 CDD:197706
IG 3150..3241 CDD:214652
Ig 3150..3241 CDD:299845
Ig 3244..3338 CDD:299845
I-set 3252..3336 CDD:254352
I-set 3354..3430 CDD:254352
IGc2 3357..3420 CDD:197706
Ig 3433..3523 CDD:299845
IG_like 3443..3523 CDD:214653
IG_like 3535..3616 CDD:214653
IGc2 3543..3606 CDD:197706
I-set 3629..3709 CDD:254352
IGc2 3636..3699 CDD:197706
I-set 3713..3800 CDD:254352
Ig 3719..3795 CDD:299845
Ig 3823..3889 CDD:143165
I-set 3897..3984 CDD:254352
IGc2 3913..3974 CDD:197706
Ig 3993..4066 CDD:299845
IG_like 3994..4075 CDD:214653
IG_like 4085..4165 CDD:214653
IGc2 4092..4155 CDD:197706
Ig 4168..4258 CDD:299845
IG 4177..4256 CDD:214652
I-set 4260..4345 CDD:254352
IGc2 4274..4335 CDD:197706
IG_like 4356..4435 CDD:214653
IGc2 4364..4426 CDD:197706
I-set 4440..4526 CDD:254352
Ig 4440..4521 CDD:299845
TSP1 4533..4584 CDD:214559
TSP1 4589..4641 CDD:214559
TSP1 4646..4698 CDD:214559
TSP1 4703..4755 CDD:214559
TSP1 4760..4812 CDD:214559
TSP1 4817..4869 CDD:214559
G2F 4868..5092 CDD:214774
EGF_CA 5107..5146 CDD:214542
EGF_CA 5147..5190 CDD:284955
EGF_CA 5192..5229 CDD:214542
EGF_CA 5230..5263 CDD:238011
EGF_CA 5272..5313 CDD:284955
EGF_CA 5315..5354 CDD:214542
EGF_CA 5432..5471 CDD:214542
EGF_CA 5472..5508 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23279
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.