DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr19 and Lrit1

DIOPT Version :9

Sequence 1:NP_001260336.1 Gene:dpr19 / 34408 FlyBaseID:FBgn0032233 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_647547.2 Gene:Lrit1 / 246214 RGDID:628607 Length:623 Species:Rattus norvegicus


Alignment Length:258 Identity:56/258 - (21%)
Similarity:94/258 - (36%) Gaps:59/258 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 NSPATVSWIRRKDF-QLLTVGLSTHSSDKRFLVEHTRHMGHWSLRIKAVREEDRGFYE--CQLSI 128
            |...|..|...||. ||..:.|..:                   |:..:..|...|.|  ..|.:
  Rat   117 NHLVTFPWAALKDTPQLQLLDLQAN-------------------RLSTLPPEAVHFLENLTFLDL 162

  Fly   129 YPTQSIVIELKIVEAVAEISSAPELHIDETSTLRLECKLKRATENPAFVFWYHDSKMINYD---- 189
            ...|.:.:..::::..|.:.:.|.|....|   ||...|:   :||    |..|.::  ||    
  Rat   163 SNNQLMRLPEELLDTWAHLKTGPYLSSRRT---RLVLGLQ---DNP----WVCDCRL--YDLVHL 215

  Fly   190 -----SQGGFVVTSIGQSNPQSGQFYRSSPANKSRATMPMESSNGVLN--SLLGSSDAIKAPAAN 247
                 |...|:...:...:|:|......|.....:...| |...||.:  |.|||:..::..|..
  Rat   216 LDGWASNLIFIEARLRCGSPRSLAGVAFSQLELRKCQSP-ELRPGVTSIISPLGSTVLLRCGATG 279

  Fly   248 VPSSTPYMTQQHQSAYLLNPSV-----------SVLTVKQVNFRHAGNYTCAPSNARPASITV 299
            :|.  |.|:.:..:...||.:|           ::|.:..|:...:|:|.|...|...||.|:
  Rat   280 IPG--PEMSWRRANGRPLNGTVHQEVSSDGSSWTLLDLPVVSLFDSGDYICQAKNFLGASETL 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr19NP_001260336.1 IG_like 50..127 CDD:214653 12/62 (19%)
IGc2 55..125 CDD:197706 12/60 (20%)
Lrit1NP_647547.2 LRRNT 23..61 CDD:214470
LRR 1 60..81
LRR_8 63..143 CDD:290566 8/44 (18%)
leucine-rich repeat 64..84 CDD:275378
LRR 2 84..105
leucine-rich repeat 85..132 CDD:275378 5/14 (36%)
LRR 3 108..128 3/10 (30%)
LRR_8 131..>176 CDD:290566 9/63 (14%)
LRR_4 131..172 CDD:289563 9/59 (15%)
LRR 4 132..153 5/39 (13%)
leucine-rich repeat 133..156 CDD:275378 5/41 (12%)
LRR 5 156..177 2/20 (10%)
leucine-rich repeat 157..180 CDD:275378 2/22 (9%)
leucine-rich repeat 181..205 CDD:275378 9/33 (27%)
TPKR_C2 201..>240 CDD:301599 10/44 (23%)
Ig 257..345 CDD:299845 22/86 (26%)
IG_like 267..345 CDD:214653 19/76 (25%)
FN3 431..501 CDD:214495
LRR 6 525..548
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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