DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr19 and dscam

DIOPT Version :9

Sequence 1:NP_001260336.1 Gene:dpr19 / 34408 FlyBaseID:FBgn0032233 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_031751619.1 Gene:dscam / 100216449 XenbaseID:XB-GENE-921689 Length:2039 Species:Xenopus tropicalis


Alignment Length:293 Identity:60/293 - (20%)
Similarity:95/293 - (32%) Gaps:122/293 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 SDVGKITSSQNHFGNTL-QSQFNTKNNTRVIAQK--------------GGLAILPC-VVKVNSPA 70
            |||.|......:..|.| |.|.:|..:..|..:.              |....:|| ||..:.|.
 Frog   562 SDVQKDVDEGEYMCNVLVQPQLSTSQSVHVTVKVPPFIQPFESQRFSIGQRVFIPCVVVSGDLPI 626

  Fly    71 TVSW-----------------------IRRKDFQLLTVGLST-----------HSSD------KR 95
            |::|                       :|..:..|:..|..|           |.|.      .|
 Frog   627 TITWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLMHNGNYTCIARNDAAAVEHQSQLIVRVPPR 691

  Fly    96 FLVEHTRHMG----------------------------------------------HWSLRIKAV 114
            |:|:.|...|                                              :.||.||.|
 Frog   692 FVVQPTDQDGIYGKAVILNCSAEGYPVPTIVWKYSKGAGVPQFQPIALNGRIQLLTNGSLLIKHV 756

  Fly   115 REEDRGFYECQLS----IYPTQSIVIELKIVEAVAEISSAPELHIDETSTLRLECKLKRAT---- 171
            .|||.|:|.|::|    ...::|:.:.:||   .|.|:|.|      .:||..:.:.|..:    
 Frog   757 LEEDSGYYLCKVSNDVGADVSKSMYLTVKI---PAMITSYP------NTTLATQGQKKEMSCTAH 812

  Fly   172 -ENPAFVFWYHDSKMINYDSQGGFVVTS--IGQ 201
             |.|..|.|..:.:|||......::|::  :|:
 Frog   813 GEKPIIVRWEKEDRMINVPEMSRYLVSTKEVGE 845

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
dpr19NP_001260336.1 IG_like 50..127 CDD:214653 31/177 (18%)
IGc2 55..125 CDD:197706 29/156 (19%)
dscamXP_031751619.1 Ig 26..121 CDD:416386
Ig strand A' 33..37 CDD:409353
Ig strand B 40..49 CDD:409353
Ig strand C 55..61 CDD:409353
Ig strand C' 63..66 CDD:409353
Ig strand D 72..75 CDD:409353
Ig strand E 80..85 CDD:409353
Ig strand F 98..106 CDD:409353
Ig strand G 109..121 CDD:409353
Ig 124..217 CDD:416386
Ig strand A' 127..136 CDD:409353
Ig strand B 140..147 CDD:409353
Ig strand C 157..162 CDD:409353
Ig strand C' 164..167 CDD:409353
Ig strand D 172..176 CDD:409353
Ig strand E 179..185 CDD:409353
Ig strand F 193..201 CDD:409353
Ig strand G 205..217 CDD:409353
Ig strand A 225..228 CDD:409353
Ig strand A' 234..237 CDD:409353
IG_like 236..310 CDD:214653
Ig strand B 242..249 CDD:409353
Ig strand C 255..260 CDD:409353
Ig strand C' 262..264 CDD:409353
Ig strand D 270..274 CDD:409353
Ig strand E 276..280 CDD:409353
Ig strand F 289..297 CDD:409353
Ig strand G 300..310 CDD:409353
Ig 313..395 CDD:416386
Ig strand A 314..319 CDD:409353
Ig strand A' 322..326 CDD:409353
Ig strand B 329..339 CDD:409353
Ig strand C 344..350 CDD:409353
Ig strand C' 351..354 CDD:409353
Ig strand E 368..374 CDD:409353
Ig strand F 381..389 CDD:409353
Ig 406..501 CDD:416386
Ig strand A 406..409 CDD:409353
Ig strand A' 415..419 CDD:409353
Ig strand B 422..431 CDD:409353
Ig strand C 436..442 CDD:409353
Ig strand C' 444..447 CDD:409353
Ig strand D 452..460 CDD:409353
Ig strand E 464..473 CDD:409353
Ig strand F 480..488 CDD:409353
Ig strand G 491..501 CDD:409353
Ig 504..593 CDD:416386 10/30 (33%)
Ig strand A 505..507 CDD:409353
Ig strand A' 512..516 CDD:409353
Ig strand B 519..526 CDD:409353
Ig strand C 533..539 CDD:409353
Ig strand C' 540..542 CDD:409353
Ig strand D 549..553 CDD:409353