DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr19 and lsamp

DIOPT Version :9

Sequence 1:NP_001260336.1 Gene:dpr19 / 34408 FlyBaseID:FBgn0032233 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:279 Identity:65/279 - (23%)
Similarity:119/279 - (42%) Gaps:39/279 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 FNTKNNTRVIAQKGGLAILPCVVKVNSPATVSWIRRKDFQLLTVGLSTHSSDKRFLVEHTRHMGH 106
            || ::...:..::|..|||.|.|:..| :.|:|:.|..  ::..|....|.|.|..:| .|.:..
 Frog    34 FN-RSTDNITVRQGDTAILRCFVEDRS-SRVAWLNRSG--IIFAGDDKWSLDPRVELE-KRSLLE 93

  Fly   107 WSLRIKAVREEDRGFYECQLSI---YPTQSIVIELKIVEAVAEISSAPELHIDETSTLRLECKLK 168
            :||||:.|...|.|.|.|.:..   ..|..:.:.:::...::.||:  ::.::|.|.:.|.| :.
 Frog    94 YSLRIQKVDVSDEGPYTCSVQTKQHTKTTQVYLIVQVPPKISNISA--DITVNEGSNVTLMC-IA 155

  Fly   169 RATENPAFVFWYH------DSKMINYDSQGGFVVTSIGQSNPQSGQF-------YRSSPANKSRA 220
            .....| .:.|.|      .|...:::.:..|:... |.:..|||::       ..|:...:.|.
 Frog   156 YGRPEP-MITWRHLTPTAGTSPARDFEGEEEFLEIQ-GITREQSGRYECKAANEVASADVKQVRV 218

  Fly   221 TM---PMESSNGVLNSLLGSSDAIKAPAANVPSSTPYMTQQHQSAYLLNP----------SVSVL 272
            |:   |:.:.:....:..|....::..|:.||:......:....:..:|.          |.|||
 Frog   219 TVNYPPIITESKSNEATTGKQAILRCEASAVPAPDFEWYKDDTRSRRINSAQGLEIRNTGSRSVL 283

  Fly   273 TVKQVNFRHAGNYTCAPSN 291
            .|..|...|.|||||..:|
 Frog   284 MVANVTEEHYGNYTCVAAN 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr19NP_001260336.1 IG_like 50..127 CDD:214653 25/76 (33%)
IGc2 55..125 CDD:197706 24/69 (35%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 26/93 (28%)
FR1 38..54 CDD:409353 4/15 (27%)
Ig strand A' 39..45 CDD:409353 0/5 (0%)
Ig strand B 47..55 CDD:409353 4/7 (57%)
CDR1 55..59 CDD:409353 1/3 (33%)
FR2 60..67 CDD:409353 2/6 (33%)
Ig strand C 60..66 CDD:409353 2/5 (40%)
CDR2 68..78 CDD:409353 1/11 (9%)
Ig strand C' 70..73 CDD:409353 0/2 (0%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 14/35 (40%)
Ig strand D 83..90 CDD:409353 2/7 (29%)
Ig strand E 93..99 CDD:409353 3/5 (60%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 0/3 (0%)
Ig strand G 119..128 CDD:409353 1/8 (13%)
FR4 121..128 CDD:409353 1/6 (17%)
Ig_3 131..206 CDD:404760 15/79 (19%)
Ig strand A' 138..143 CDD:409353 1/6 (17%)
Ig strand B 149..156 CDD:409353 2/7 (29%)
Ig strand C 162..167 CDD:409353 1/4 (25%)
Ig strand C' 173..175 CDD:409353 0/1 (0%)
Ig strand E 185..191 CDD:409353 1/6 (17%)
Ig strand F 198..205 CDD:409353 1/6 (17%)
Ig strand G 212..220 CDD:409353 1/7 (14%)
Ig_3 223..302 CDD:404760 18/78 (23%)
putative Ig strand A 224..230 CDD:409353 1/5 (20%)
Ig strand B 240..244 CDD:409353 0/3 (0%)
Ig strand C 253..257 CDD:409353 0/3 (0%)
Ig strand E 281..285 CDD:409353 3/3 (100%)
Ig strand F 295..300 CDD:409353 4/4 (100%)
Ig strand G 308..311 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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