DRSC/TRiP Functional Genomics Resources

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Protein Alignment CtsL4 and Ctso

DIOPT Version :10

Sequence 1:NP_609387.1 Gene:CtsL4 / 34401 FlyBaseID:FBgn0032228 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001414104.1 Gene:Ctso / 684529 RGDID:1589156 Length:311 Species:Rattus norvegicus


Alignment Length:225 Identity:80/225 - (35%)
Similarity:120/225 - (53%) Gaps:22/225 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 NVPESLDWRSKGFITPPYNQLSCGSCYAFSIAESI--MGQVFKRTGKILS-LSKQQIVDCSVSHG 187
            ::|...|||.|..:....||.:||.|:|||:..::  .|.:   .||.|. ||.||::|||.:  
  Rat    97 SLPLRFDWRDKHVVNHVRNQKTCGGCWAFSVVSAVESAGAI---QGKPLDYLSVQQVIDCSFN-- 156

  Fly   188 NQGCVGGSLRNTLSYLQSTG-GIMRDQDYPYVARKGKCQFVP----DLSVVNVTSWAILPVRDEQ 247
            |.||.|||....||:|..|. .::.|..||:.|..|.|::.|    .:||...:::......||.
  Rat   157 NYGCRGGSPLGALSWLNETQLKLVADSQYPFKAENGLCRYFPPSQSGVSVKGFSAYDFSNQEDEM 221

  Fly   248 AIQAAVTHIGPVAISINASPKTFQLYSDGIYDDPLCSSASVNHAMVVIGFGK----DYWILKNWW 308
            |  .|:...||:.:.::|  .::|.|..||.... |||...|||:::.||.|    .||:::|.|
  Rat   222 A--RALLSFGPLVVIVDA--VSWQDYLGGIIQHH-CSSGEANHAVLITGFDKTGNTPYWMVRNSW 281

  Fly   309 GQNWGENGYIRIRKGVNMCGIANYAAYAIV 338
            |.:||..||..::.|.|:||||:..|...|
  Rat   282 GNSWGVEGYAYVKMGGNVCGIADSVAAVFV 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CtsL4NP_609387.1 Inhibitor_I29 36..96 CDD:462410
Peptidase_C1A 128..336 CDD:239068 79/219 (36%)
CtsoNP_001414104.1 None
Blue background indicates that the domain is not in the aligned region.

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