DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and GAT1

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_116632.1 Gene:GAT1 / 850523 SGDID:S000001873 Length:510 Species:Saccharomyces cerevisiae


Alignment Length:542 Identity:117/542 - (21%)
Similarity:199/542 - (36%) Gaps:162/542 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 PGLDRKIEISNQEMPAHSLYPSLFKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYENLQQQ 405
            |.||..:.: |:|:  ..||.|..|  .:....:...:|...|::           ..:..:.:.
Yeast    46 PNLDPDLNL-NKEI--WDLYSSAQK--ILPDSNRILNLSWRLHNR-----------TSFHRINRI 94

  Fly   406 LETAAVLMDISKKIVISPPCSNPQSPCFSAAVDTSIKSSVIKSKRPSNQNEIQDGVEIDLSVKKQ 470
            ::.:..:||.|            .|| |::.|:.:         .|.| |::.|           
Yeast    95 MQHSNSIMDFS------------ASP-FASGVNAA---------GPGN-NDLDD----------- 125

  Fly   471 KNDYSNQRNAAPIHHFCQTPMLDIQSHLRS-------EEDFQNYSITINQVGGSDFKSKAPKAST 528
             .|..||:      .|.....|:..|...:       ::|.:.:||..:.: .:|..|.:.:||.
Yeast   126 -TDTDNQQ------FFLSDMNLNGSSVFENVFDDDDDDDDVETHSIVHSDL-LNDMDSASQRASH 182

  Fly   529 G-----SLLDSGDSS--DSH-----KLEMDITSSINDRKTPDSLSSDHATDAATTQLWQALARSA 581
            .     :.||:..||  |.|     .|.....:|||:..:.:|..::::...|..........::
Yeast   183 NASGFPNFLDTSCSSSFDDHFIFTNNLPFLNNNSINNNHSHNSSHNNNSPSIANNTNANTNTNTS 247

  Fly   582 AKSKEDNPASQIFRNMMSQPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSS--KSKPCRRKQSFP 644
            |.:..::|.  :.||        |.||             ::|..|...||  |.||..:|..  
Yeast   248 ASTNTNSPL--LRRN--------PSPS-------------IVKPGSRRNSSVRKKKPALKKIK-- 287

  Fly   645 TKTDCIDVVNENVTDTYTTSEATPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRG 709
                         :.|...|.|||...            ..:..|:.||||.|.||.:||:..:|
Yeast   288 -------------SSTSVQSSATPPSN------------TSSNPDIKCSNCTTSTTPLWRKDPKG 327

  Fly   710 EMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKELERS---------------KKKHKQMSSC 759
            ..:||||||:.|||||.||.|::.|.|..|:|...::..:               |||:...|..
Yeast   328 LPLCNACGLFLKLHGVTRPLSLKTDIIKKRQRSSTKINNNITPPPSSSLNPGAAGKKKNYTASVA 392

  Fly   760 SSIETTKQDFLTARESLAISGLVLNKFKKEIDDTETPAAAALKDILSRRKKSNSLPAFNDTCES- 823
            :|......:.:...:|..|          .|....:|:........:|...|:|:|...:|..| 
Yeast   393 ASKRKNSLNIVAPLKSQDI----------PIPKIASPSIPQYLRSNTRHHLSSSVPIEAETFSSF 447

  Fly   824 -ADLSAPLNL------VSSENN 838
             .|::..:|:      .||.||
Yeast   448 RPDMNMTMNMNLHNASTSSFNN 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 26/47 (55%)
ZnF_GATA 691..742 CDD:238123 27/50 (54%)
GAT1NP_116632.1 GAT1 1..495 CDD:227928 117/542 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2600
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.820

Return to query results.
Submit another query.