DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and SRD1

DIOPT Version :10

Sequence 1:NP_609383.2 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_009944.2 Gene:SRD1 / 850377 SGDID:S000000611 Length:221 Species:Saccharomyces cerevisiae


Alignment Length:275 Identity:57/275 - (20%)
Similarity:93/275 - (33%) Gaps:87/275 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   504 FQNYSITINQVGGSDFKSKAPKASTGSLLDSGDSSDSHKLEMDITSSINDRKTPDSLSSDHATDA 568
            :.||..:     ||.|.::..|                |.:|:.|..:| |:..|..|:|     
Yeast     3 YNNYDNS-----GSSFLTRVVK----------------KSDMEKTLLLN-REIDDWKSND----- 40

  Fly   569 ATTQLWQALARSAAKSKEDNPASQIFRNM-MSQPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSS 632
                     .:.|.|.:....||..|..: .||..|..|...:       |....|:||:. ...
Yeast    41 ---------KKKAYKERGRVYASCSFIEVSFSQIRAVDVEKKI-------ENAEQLRDLTR-NIV 88

  Fly   633 KSKPCRRKQSFPTKTDCIDVVNE--------------------------NVTDTYTTSEATPDDK 671
            |:|.....:..|:|.......|.                          ::|..| :.:.|...|
Yeast    89 KNKTSSLNEITPSKNRVTSACNSERRTTSQEANNLEGYHSCAQGTSRSASITKKY-SKKTTSRPK 152

  Fly   672 KDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSV-RGEMVCNACGL-YFKLHGVNRPHSMRRD 734
            ::||...|.|   |..|:  ||.|....|..||... :...:|:.||| |.|        .::::
Yeast   153 REKRQTILPN---GEIKE--CSKCKDTWTIQWRSGPDQNRELCSPCGLAYGK--------RLKKE 204

  Fly   735 TIHTRRRRPKELERS 749
            ....|:...|.::|:
Yeast   205 NEKKRQAADKRIDRN 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_609383.2 zf-AD <228..284 CDD:214871
GAT1 625..>742 CDD:227928 30/144 (21%)
ZnF_GATA 691..742 CDD:238123 13/52 (25%)
SRD1NP_009944.2 ZnF_GATA 163..214 CDD:214648 15/60 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.