DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and Trps1

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:XP_006521623.1 Gene:Trps1 / 83925 MGIID:1927616 Length:1296 Species:Mus musculus


Alignment Length:804 Identity:166/804 - (20%)
Similarity:282/804 - (35%) Gaps:232/804 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SQQIQSQTLHHHQNQTKIHYTPSVPSAADAKSSERERQCQLES-DIAERSTVFKSQSSSDHEHIE 167
            |.:::...|..|.|:.|:    |:||:...|.||:.....:.: ..::...|.|.|   |...::
Mouse   351 STELEQHFLQTHPNKIKV----SLPSSEGVKPSEKNSNKSIPALRASDSGDVGKWQ---DKMTVK 408

  Fly   168 YSGETPSPSASLSQSQTKSEPMREEEEHQHNHNQQSGREETSV-----------NTTNISGTDNY 221
            ...:||         ...|.|::..:.     ::|:|.|.||.           :::::...::|
Mouse   409 AGDDTP---------VGYSVPIKPLDS-----SRQNGTEATSYYWCKFCSFSCESSSSLKLLEHY 459

  Fly   222 GKEHGRDDSS--SPHLTFQ-----IFN----CLSIK----ALPNDGLPNVVCGDCRQKLDSFEKF 271
            ||:||...|.  :|.|..:     :.|    ..|::    ..|..||......|...|  ..|..
Mouse   460 GKQHGAVQSGGLNPELNDKLPRGSVINQNDLAKSVEGEPLTKPEKGLSGAKKKDFPSK--GAEDN 522

  Fly   272 RTMAHNSQIALKEFLNISKNLRPD----------------------------PNDL---ETKLDA 305
            ...::|.|..  :| ..||:..||                            |..|   |..|..
Mouse   523 MVTSYNCQFC--DF-RYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGE 584

  Fly   306 I-----LKASSEAIAAKALTELST----FSKVKYDHSKLDSSIQPGLDRKIEISNQEMPAHSLYP 361
            |     .:.|:.:..|..|..||.    .|:||:...:...| .|.:|        .:..|  |.
Mouse   585 ITYPFACRKSNCSHCALLLLHLSPGVAGSSRVKHQCHQCSFS-TPDVD--------VLLFH--YE 638

  Fly   362 SLFKSITMKSDQKSKAMSGSSHSQF--DSKLQKDSDIEKYENLQQQLETAAVLMDISKKIVISPP 424
            ::.:|......|::..:.||...|.  ||   |:....|.:.:.|..|      :||:....:..
Mouse   639 TVHESQASDVKQEANHLLGSDGQQAVRDS---KEHSCTKCDFITQVEE------EISRHYRRAHS 694

  Fly   425 CSNPQSPCFSAAVDTSIKS--SVIKSKR----PSNQNE-------IQDGVEIDLSVKKQKNDYSN 476
            |...:...|:||...|:..  :.:..:.    .:|..|       |::..:|||.|....|..|.
Mouse   695 CYKCRQCSFTAADTQSLLEHFNTVHCQEQEITTANGEEGGHAIPTIKEEPKIDLKVYSLLNPDSK 759

  Fly   477 QRNAAPIHHFCQTPMLDIQSHLRSEEDFQNYSITINQVG--GSDFKSKAP---KASTGSLLDSGD 536
            .....| ....:...||.:..|:.:...::.:..:..|.  |:|....:|   :||.|.|     
Mouse   760 MGETVP-ESIVKREKLDDKEGLKDKIWTESSTDDLRGVAWRGADILRGSPSYTQASLGVL----- 818

  Fly   537 SSDSHKLEMDITSSINDRKTPDSLSSDHATDAATTQLWQALARSAAKSKEDNPASQIFRNMMSQP 601
                               ||.|.|.:.                 .|:..|:|      |:.:..
Mouse   819 -------------------TPVSSSQEQ-----------------TKTLRDSP------NVEAAH 841

  Fly   602 FAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFP------TKTDCIDVVNENVTDT 660
            .|.|:......||         ..|..|.:...|.....|.:|      ||.:...::..     
Mouse   842 LARPMYGLAVDTK---------GFLQGAPAGSEKSASLTQQYPASGESKTKDESQSLLRA----- 892

  Fly   661 YTTSEATPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGV 725
             .|...|| :::.:|...:|           |:||.|..|::||::..|..||||||||.|||..
Mouse   893 -VTISGTP-NRRRRRGSGVF-----------CANCLTTKTSLWRKNANGGYVCNACGLYQKLHST 944

  Fly   726 NRP----------HSMRRDTIHTRRRRPKELERSKKKHKQMSS------CSSIETTKQDFLTARE 774
            .||          ..:||.|  .:|..|:.|:..:...:|..|      .|.:|...:|.|:...
Mouse   945 PRPLNIIKQNNGEQIIRRRT--RKRLNPEALQAEQLNKQQRGSGEEQVNGSPLERRSEDHLSESH 1007

  Fly   775 SLAISGLVLNKFKKEIDDTETPAA 798
            ...|....|:|::.:...|::.:|
Mouse  1008 PREIPLPSLSKYEAQGSLTKSHSA 1031

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871 13/70 (19%)
ZnF_GATA 688..736 CDD:214648 23/57 (40%)
ZnF_GATA 691..742 CDD:238123 25/60 (42%)
Trps1XP_006521623.1 ZnF_GATA 910..966 CDD:238123 25/68 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830957
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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