DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAd and GATA12

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_197955.1 Gene:GATA12 / 832652 AraportID:AT5G25830 Length:331 Species:Arabidopsis thaliana


Alignment Length:354 Identity:74/354 - (20%)
Similarity:120/354 - (33%) Gaps:116/354 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   426 SNPQSPCFSAAVDTSIKSSVIKSKR------PSNQNEIQDGVEIDLSVKKQKNDYSNQRNAAPIH 484
            ||..........|::..:::..|..      ||...::|||......:....:|.:::...    
plant    24 SNDDDEENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSFSGDLCIPSDDLADELEW---- 84

  Fly   485 HFCQTPMLDIQSHLRSEEDFQNYSITINQVGGSDFKSKA-PKASTGSLLDSGDSSDSHKLEMDIT 548
                  :.:|.....|.||.....:.      |.|||:. ||:.|||                  
plant    85 ------LSNIVDESLSPEDVHKLELI------SGFKSRPDPKSDTGS------------------ 119

  Fly   549 SSINDRKTPDSLSSDHATDAATTQLWQALARS-AAKSKEDNPASQIFRNMMSQPFAFPVP----- 607
                 .:.|:|.|....||.:.    .|.||| .:::...|.||   |.::.:.| :..|     
plant   120 -----PENPNSSSPIFTTDVSV----PAKARSKRSRAAACNWAS---RGLLKETF-YDSPFTGET 171

  Fly   608 --STVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCIDVVNENVTDTYTTSEATPDD 670
              |:......|..|..|:..|.:.|:......|:|          ||             ::|:.
plant   172 ILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKK----------DV-------------SSPES 213

  Fly   671 KKDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRG-EMVCNACGLYFK---LHGVNRP--- 728
                          |..::..|.:|.|..|..||....| :.:|||||:.:|   |....||   
plant   214 --------------GGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAAS 264

  Fly   729 -------HS-MRRDTIHTRRRRPKELERS 749
                   || ..|..:..||:  ||:.|:
plant   265 PTFVLAKHSNSHRKVMELRRQ--KEMSRA 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 19/62 (31%)
ZnF_GATA 691..742 CDD:238123 21/65 (32%)
GATA12NP_197955.1 ZnF_GATA 217..265 CDD:214648 16/47 (34%)
GATA 221..256 CDD:278735 13/34 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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