DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and trps1

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_001171405.1 Gene:trps1 / 795613 ZFINID:ZDB-GENE-030131-8404 Length:1243 Species:Danio rerio


Alignment Length:863 Identity:163/863 - (18%)
Similarity:265/863 - (30%) Gaps:312/863 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SQQIQSQTLHHHQNQTKIHYTPSVPSAADAK-SSERERQC------------------QLESD-I 148
            |..::...|..|.|  |:...|:..|..|.| ||||:..|                  :.|.| :
Zfish   309 SVDLEQHFLATHPN--KMKSPPASNSNLDEKSSSERKGNCVPRIGADEHGKWADRVAVRSEDDSV 371

  Fly   149 AERSTVFKSQSSSDHEHIEYSGETPS-----PSASLSQSQTKSEPMREEEEHQHNH--------- 199
            |..|...:|..|..|   ...|::||     ...|.|...:.:..:.|..|.:|.|         
Zfish   372 AGYSVPIRSSDSPSH---TVGGDSPSAYYWCKYCSFSCEASGASKLLEHYEKRHGHGVVREGSPG 433

  Fly   200 -------------NQQSGREETSVNTTNISGTD-NYGKEHGRD-DSSSPHL-----TFQIFNCLS 244
                         .:::..:||.|.:.|....| .|...||.: ...:|.|     ...|..| :
Zfish   434 DRKTRDGDAHLRKKEKTSEQETVVTSYNCQFCDFRYSMTHGPEVIIVAPLLHHYQRAHSIHKC-T 497

  Fly   245 IKALPNDGLPNVVC------GD------CRQKLDSFEKFRTMAHNSQIALKEFLNISKNLRPDPN 297
            ||..|  ..|..:|      |:      ||:.        :.:|.:.:    .|....|..|.|.
Zfish   498 IKHCP--FCPRGLCTPEKHLGEISYPFACRKS--------SCSHCALL----LLTGGGNAAPSPP 548

  Fly   298 DLE--------------TKLDAILKASSEAIAAKALTELSTFSKVKYDHSKLDSSIQPGLDRKIE 348
            .:.              |.:|.:|.....|..:.:|.|:.     ..:....|....||.|...|
Zfish   549 AVRASVTHLCDQCPFTATDIDLLLLHYDSAHTSHSLLEVK-----PEEEGSGDGGAGPGQDHPGE 608

  Fly   349 IS----------NQEMPAHSLYPSLFKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYENLQ 403
            .:          .:|:..|.              ::........|..|.:               
Zfish   609 YACTKCHFCTEVEEEIFRHY--------------RRVHGCCRCRHCSFTA--------------- 644

  Fly   404 QQLETAAVLMDISKKIVISPPCSNPQSPCFSAAVDTSIKSSVIKSKRPSNQNEIQDGVEIDLSVK 468
              .:|.|:|...:     |..|.:|..|..:.|...|..|:                    |.:|
Zfish   645 --TDTTALLDHFN-----SAHCQDPADPSCAPANGCSAPST--------------------LRIK 682

  Fly   469 KQKNDYSNQRNAAPIHHFCQTPMLDIQSHLRSEEDFQNYSITINQVGGSDFKSKAPKASTGSLLD 533
            ::                             |:.|.:.||:.            .|:...|:.:.
Zfish   683 EE-----------------------------SKGDLKLYSLV------------PPEPLPGAEMV 706

  Fly   534 SGDSSDSHKLEMDITSSINDRKTPDSLSSDHATDAATTQLW-QALARSAAKSKEDN-------PA 590
            ..::.|..|                             :.| :|||..|.::.|.:       |.
Zfish   707 KSEAQDEEK-----------------------------KSWVEALAGGAVRAGEQHVQSLVWVPK 742

  Fly   591 SQIFRNMMSQPFAFPVPSTVSFTKVP---EEP-----IALLKDLSEAQSSKSKPCRRKQSFPTKT 647
            .:....:...|..||..|......|.   :||     ..:|:|.:....|.|...:...| .|..
Zfish   743 ERAGEILRGSPAPFPQASLGLLNAVAGGGKEPQTQKGATMLRDSTGLMFSLSADAKGYLS-GTPA 806

  Fly   648 DCIDVVNE---NVTDTYTTSEATPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRG 709
            ..::...:   :.|:..:..|.:....:.:|...:|           |:||.|..|::||::..|
Zfish   807 GAVEKGGQQYPSATEGKSAKEESQSLLRRRRGSGVF-----------CANCLTTKTSLWRKNANG 860

  Fly   710 EMVCNACGLYFKLHGVNRPHSMRRDTIH---TRRRRPKELERSKKKHKQMSSCSSIETTKQDFLT 771
            ..||||||||.|||...||.::.:....   .|||..|.|.......:|:.|       ||..:.
Zfish   861 GYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPDPMPSEQVGS-------KQQRVN 918

  Fly   772 ARESLAISGLVLNKFKKEIDDTETPAAAALKDILSRRK-------------KSNSLP----AF-- 817
            :.|.|..|.|     ::..:|..:..:      |||.:             ||:..|    ||  
Zfish   919 SEERLNGSPL-----ERRTEDNGSDGS------LSRAEAQVKYEAYGPSGTKSHPSPRSTHAFLV 972

  Fly   818 NDTCESADLSAPLNLVSS 835
            |.|.|......||::..|
Zfish   973 NQTLEIHKRMPPLHMHKS 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871 13/73 (18%)
ZnF_GATA 688..736 CDD:214648 21/47 (45%)
ZnF_GATA 691..742 CDD:238123 23/53 (43%)
trps1NP_001171405.1 ZnF_GATA 838..881 CDD:214648 22/53 (42%)
ZnF_GATA 842..898 CDD:238123 25/66 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573874
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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