DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAd and Gata4

DIOPT Version :10

Sequence 1:NP_609383.2 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:XP_006252251.1 Gene:Gata4 / 54254 RGDID:2665 Length:441 Species:Rattus norvegicus


Alignment Length:240 Identity:67/240 - (27%)
Similarity:100/240 - (41%) Gaps:55/240 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   556 TPDSLSSDHATDAATTQLWQALARSAAKSKEDNPAS------------QIFRNMMSQPFAFPVPS 608
            ||..:|...:....|..|..|.|.:||:......:|            |..|...:..::.|.|:
  Rat   100 TPPPVSPRFSFPGTTGSLAAAAAAAAAREAAAYSSSGGAAGAGLAGREQYGRPGFAGSYSSPYPA 164

  Fly   609 TVSFTKVP------------EEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCIDVVNENVTDTY 661
            .::.....            :.|:.      .:...::.|.|.    |...|..|..:|......
  Rat   165 YMADVGASWAAAAAASAGPFDSPVL------HSLPGRANPARH----PNLVDMFDDFSEGRECVN 219

  Fly   662 TTSEATPDDKKDKRNINLFNA------IPGAQK---------------DMSCSNCGTLTTTIWRR 705
            ..:.:||..::|.....|.||      :.|..:               .:||:||.|.|||:|||
  Rat   220 CGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTTTTLWRR 284

  Fly   706 SVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKELERSK 750
            :..||.||||||||.|||||.||.:||::.|.||:|:||.|.:||
  Rat   285 NAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKNLNKSK 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_609383.2 zf-AD <228..284 CDD:214871
GAT1 625..>742 CDD:227928 46/137 (34%)
ZnF_GATA 691..742 CDD:238123 33/50 (66%)
Gata4XP_006252251.1 GATA-N 1..204 CDD:461628 18/113 (16%)
ZnF_GATA 216..266 CDD:238123 7/49 (14%)
ZnF_GATA 270..321 CDD:238123 33/50 (66%)
Blue background indicates that the domain is not in the aligned region.

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