DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAd and pnr

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:352 Identity:91/352 - (25%)
Similarity:126/352 - (35%) Gaps:113/352 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   529 GSLLDSGDSSDSHKLEMD----------ITSSINDRKTPDSLSSDH---------ATDAATTQLW 574
            |.||..|||:...:...|          :|.|.....|..|.|:.|         :..||.|.| 
  Fly     2 GILLSDGDSTSDQQSTRDYPHFSGDYQNVTLSAASASTSASASATHVAAVKMYHSSAVAAYTDL- 65

  Fly   575 QALARSAAKSKEDNPASQIFRNMMSQPFAFPVPSTVSFTKV------------------------ 615
             |.|.|||.:......|...:..::.|..  |||...:..|                        
  Fly    66 -AAAGSAASAGVGVGVSGYHQQAVNAPVY--VPSNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQ 127

  Fly   616 ---PEEPIAL-----LKDLSEAQSSKSKPCRRKQSFPTKTDCID-------VVNENVTDTYTTSE 665
               |...:.:     ..|.|..|.|..........|....:|::       :...:.|..|..:.
  Fly   128 FYSPNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNA 192

  Fly   666 A----------TPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRGEMVCNACGLYF 720
            .          .|..|..||   |.:|....:..:.|:||||.|||:|||:..||.||||||||:
  Fly   193 CGLYHKMNGMNRPLIKPSKR---LVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYY 254

  Fly   721 KLHGVNRPHSMRRDTIHTRRRRPKE------------------------------------LERS 749
            ||||||||.:||:|.|.||:|:||:                                    |||.
  Fly   255 KLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEAIKECKEEHDLKPSLSLERH 319

  Fly   750 --KKKHKQMSSCSSIETTKQDFLTARE 774
              .|.|..|.|.:|..:|.....:|::
  Fly   320 SLSKLHTDMKSGTSSSSTLMGHHSAQQ 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 32/47 (68%)
ZnF_GATA 691..742 CDD:238123 35/50 (70%)
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 5/47 (11%)
ZnF_GATA 168..212 CDD:238123 5/43 (12%)
ZnF_GATA 223..270 CDD:214648 32/46 (70%)
ZnF_GATA 226..276 CDD:238123 35/49 (71%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438450
Domainoid 1 1.000 62 1.000 Domainoid score I2939
eggNOG 1 0.900 - - E1_COG5641
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.790

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