DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and gata6

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_989422.1 Gene:gata6 / 395062 XenbaseID:XB-GENE-485063 Length:524 Species:Xenopus tropicalis


Alignment Length:516 Identity:116/516 - (22%)
Similarity:184/516 - (35%) Gaps:168/516 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 ISNQEMPAHSLYP---------SLFKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYENLQQ 404
            ||.:..||.|.:|         .||:.:    |..:|.:..:..:::.|.|.:....:.|:.|..
 Frog    81 ISAEGRPAPSYHPLGLSHPEDLILFRDL----DHINKLIVPNRETRYSSALPEPPAGDMYQTLTI 141

  Fly   405 QLETAAVLMDISKKIVISPPCSNPQSPCFSAAVDTSIKSSVIKSKRPSNQNEIQDGVEIDLSVKK 469
            ......:..|.|:...:....|:|      ..|.||...|::                  .|:..
 Frog   142 TAAQGPLGYDHSQGTFMHSAASSP------VYVPTSRVGSML------------------TSISY 182

  Fly   470 QKNDYSNQRNAAPIHHFCQTPMLDIQSHLRSEEDFQNYSITINQVGGSDFKSKAPKAST------ 528
            .:...::|...:..:|:.|.         .||              ||.|.|.:|..|:      
 Frog   183 LQGTGASQGAHSVNNHWSQA---------TSE--------------GSSFSSSSPHTSSRYHYSP 224

  Fly   529 ------GSLLDSGDSSDSHKLEMDITSSINDRKTP------DSLSSDHATDAA--TTQLWQALAR 579
                  ||..|:|.||       .:|.|..|:.||      .|..|.:....|  .|..|     
 Frog   225 SPPMANGSTRDTGYSS-------SLTVSGRDQYTPLARPLNGSYGSPYTPYMAPQLTSAW----- 277

  Fly   580 SAAKSKEDNPASQIFRNMMS--QPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQS 642
                     ||......|:.  |....|:       .|...|..:|.:|.|::            
 Frog   278 ---------PAGPFDNTMLHSLQSRGAPI-------NVRGAPGDVLDELPESR------------ 314

  Fly   643 FPTKTDCIDVVNENVTDTYTTSEATPDDKKDKRNINLFNA--------------------IPGAQ 687
                 :|::          ..|..||..::|.....|.||                    :|.::
 Frog   315 -----ECVN----------CGSVQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSR 364

  Fly   688 K-DMSCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKELERSKK 751
            : .::|:||.|.|||:|||:..||.||||||||.|||||.||.:|:::.|.||:|:||.|.:||.
 Frog   365 RIGLACANCHTTTTTLWRRNTEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNLNKSKS 429

  Fly   752 KHKQ--------MSSCSSIETTKQD--FLTARESLAISGLVLNKFKKEIDDTETPAAAALK 802
            ....        |:..|:..:|..|  ......|...:.:|.:.......|:.:|.:..||
 Frog   430 SSSNGNSSHQIPMTPTSTTSSTNSDDCIKNGSPSQNTAPVVASSLMSTQTDSTSPNSNTLK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 28/48 (58%)
ZnF_GATA 691..742 CDD:238123 31/50 (62%)
gata6NP_989422.1 GATA-N 135..304 CDD:368398 44/243 (18%)
ZnF_GATA 315..360 CDD:238123 8/54 (15%)
ZnF_GATA 369..420 CDD:238123 31/50 (62%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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