DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and gata5

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_571310.2 Gene:gata5 / 30482 ZFINID:ZDB-GENE-980526-340 Length:383 Species:Danio rerio


Alignment Length:405 Identity:104/405 - (25%)
Similarity:152/405 - (37%) Gaps:134/405 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 IHHFCQTP----------MLDIQSHLRS-EEDFQNYSITIN----QVG--GSDFKSKAPKASTGS 530
            ||....:|          ||....:|:: |...|.:.|:.:    |.|  .|.|...:|....| 
Zfish    22 IHPSASSPVYVPTTRVPAMLQTLPYLQTCESSHQAHGISSHHAWPQTGTDNSSFNPGSPHPPPG- 85

  Fly   531 LLDSGDSSDSHKLEMDITSSINDR----KTPDSLSSDHATDAATTQLWQALARSAAKSKEDNPAS 591
                  .|.||...:   ||...|    :.|..||:....|    |...||.||...|       
Zfish    86 ------FSYSHSPPV---SSSTGRDAAYQNPLMLSNGGRAD----QYGSALVRSVGGS------- 130

  Fly   592 QIFRNMMSQPF-AFPVPS-TVSFTKVP------------------EEPIALLKDLSEAQSSKSKP 636
                  .|.|: |:..|. ..|:|..|                  ...|.:|.||         |
Zfish   131 ------YSSPYAAYMSPEMATSWTPGPFDGGMIGLQGRQGTLPGRRSSIDMLDDL---------P 180

  Fly   637 CRRKQSFPTKTDCIDVVNENVTDTYTTSEATPDDKKDKRNINLFNAI------------------ 683
            |..:       :|::          ..|.:||..::|.....|.||.                  
Zfish   181 CEGR-------ECVN----------CGSISTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQK 228

  Fly   684 ----PGAQKDMSCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPK 744
                ...:..:.|:||.|.|||:|||:..||.||||||||.|||||.||.:|::::|.||:|:||
Zfish   229 RLQSTSRRAGLCCTNCHTSTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPK 293

  Fly   745 ELERSKKKHKQMSSCSSIETTKQDFLTARESLAISGLVLNKFKKEIDDTETPAAAALKDILSRRK 809
             :.::|.     ||.|::...     |:..||.:|... :..|.|.....:|.|.  :.::|..:
Zfish   294 -MPKTKS-----SSGSTVSGA-----TSPTSLPVSENA-STIKSEPSIAASPYAG--QTVVSVTQ 344

  Fly   810 KSNSLPAFNDTCESA 824
            .|..|    |:..||
Zfish   345 ASTQL----DSASSA 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 28/47 (60%)
ZnF_GATA 691..742 CDD:238123 31/50 (62%)
gata5NP_571310.2 GATA-N 1..173 CDD:283099 38/177 (21%)
ZnF_GATA 182..228 CDD:214648 8/62 (13%)
ZnF_GATA 185..236 CDD:238123 8/60 (13%)
ZnF_GATA 236..285 CDD:214648 28/48 (58%)
ZnF_GATA 241..291 CDD:238123 31/49 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.