DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAd and SPCC1393.08

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_587966.1 Gene:SPCC1393.08 / 2538884 PomBaseID:SPCC1393.08 Length:557 Species:Schizosaccharomyces pombe


Alignment Length:553 Identity:119/553 - (21%)
Similarity:204/553 - (36%) Gaps:172/553 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 YPSLFKSITMKSDQKSKAMSGSSHSQFDS----KLQKDSDIEKYENLQQQLETAAVL----MDI- 415
            ||..|.|  .:::||.:....:..|..||    ..::.||:|..:.....|..:.:|    :|| 
pombe    86 YPLAFNS--TENNQKLQTNPSARWSLLDSMDFDNQRQCSDLESAQLGDSGLLKSTILSNSHIDIA 148

  Fly   416 ----SKKIVISPPCSNPQSPCF----SAAVDTSIKSSVIKSKRPSNQNEIQDGVEIDLSVKKQKN 472
                ||....:||.|..|:||.    ||.:||....::                         .:
pombe   149 ALSSSKTSEPTPPFSYVQTPCIPTPSSALIDTPFPGAL-------------------------DS 188

  Fly   473 DYSNQRNAAPIHHF----CQTPMLDIQSHLRSEEDFQNYSITINQVGGSDFKSKAPKASTGSLLD 533
            ::....:.||:...    ||.....|...       .||...::.:|   |.|.           
pombe   189 EFGFDESQAPLFPASDGDCQRAFASISYP-------TNYGCKLSNLG---FMSP----------- 232

  Fly   534 SGDSSDSHKLEMDITSSINDRKTPDSL--SSDHATDAATTQLWQALARSAAKSKEDNPAS----- 591
                      :..:...:||..:|..|  ||...|.:::..|.|:....:..|..|:.|:     
pombe   233 ----------QSPVKRELNDSTSPSKLSESSSSLTGSSSALLSQSEFLGSVPSLSDSIATVDPFF 287

  Fly   592 --QIFR----------------------NMMSQPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSS 632
              :.|.                      |:.|...:..:.||::.......|:|.:|  :|..|.
pombe   288 SFESFETDEKARSLLMDASLKLPQFSTPNLSSNSSSLSLKSTLAEGMKGSTPLAAVK--TEKASK 350

  Fly   633 KSKPCRRKQSFPTKTDCIDVVNENVTDTYTTSEATPDDKKDKRNI-----NLFNAIPGAQKDMS- 691
            .::..::|:.  .:..|.   |..||:|......:     ||.|.     .|:|...|..:.:| 
pombe   351 AARVMKQKKH--REHVCF---NCGVTETPLWRRTS-----DKLNFLCNACGLYNKQYGVMRPLSP 405

  Fly   692 -------------CSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRP 743
                         |:||.:..|::||:...|:.||||||||.:|||.|||..::::.| |||||.
pombe   406 RNKGSSKALENLVCANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKI-TRRRRG 469

  Fly   744 KELERSKKKHKQMSSCSSIETTKQDFLTARESLAISGLVLNKFKKEIDDTETPAAAALKDILSRR 808
            |    .......||     :..|.:|....:|:.::.::.:|      ..|:|   .|.:.:|..
pombe   470 K----GPGGEDGMS-----DEVKSEFPVLSKSVTMAEILSSK------GLESP---QLTNSVSVS 516

  Fly   809 KKSNSLPAFNDTCESADLS---APLNLVSSENN 838
            |..|:         .||:|   |.::..|.:|:
pombe   517 KMPNT---------DADVSLEHAKISFDSLDNS 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 22/61 (36%)
ZnF_GATA 691..742 CDD:238123 26/64 (41%)
SPCC1393.08NP_587966.1 GAT1 31..557 CDD:227928 119/553 (22%)
ZnF_GATA 364..413 CDD:238123 12/56 (21%)
ZnF_GATA 418..462 CDD:238123 21/43 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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