DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAd and elt-3

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_001367208.1 Gene:elt-3 / 181503 WormBaseID:WBGene00001251 Length:317 Species:Caenorhabditis elegans


Alignment Length:328 Identity:73/328 - (22%)
Similarity:117/328 - (35%) Gaps:107/328 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   447 KSKRPSNQNEIQDGVEIDLSVKKQKNDYSNQRNAAPIHHFCQTPMLDIQSHLRSEEDFQNYSITI 511
            :::.|...|.::|.   .||||             |..::|...|.|.:....:......| :.:
 Worm    82 QARLPGISNFMKDS---QLSVK-------------PAAYYCSPTMNDYRVEKVANTLLDPY-VQL 129

  Fly   512 NQVGGSDFKSKAPKASTGSLLDSGDSSDSHKLEMDITSSINDRKTPDSLSSDHATDAATTQLWQA 576
            :|...:||       :...:|       :|:.||      .....|..||:.:...|..||..| 
 Worm   130 DQPTYADF-------TNAQVL-------NHQQEM------LQMNFPTPLSTSYMNTAQVTQTHQ- 173

  Fly   577 LARSAAKSKEDNPASQIFRNMMSQPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQ 641
                                |....|...:.:..:|....:.|:.||                  
 Worm   174 --------------------MPFNIFELNLSNFATFQPACDTPLPLL------------------ 200

  Fly   642 SFPTKTDCIDVVNENVTDTYTT-SEATP--------DDKKDKRNINLFNAIPGAQKDMSCSNCGT 697
                        |.:.|..||| |..||        :.|..|:.:    |.....::..||||.|
 Worm   201 ------------NSSPTHPYTTMSNFTPPPQDPLVAEPKPMKKRM----AAVQCHQNSICSNCKT 249

  Fly   698 LTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKE------LERSKKKHKQM 756
            ..||:|||:..|.:.||||.|||:.:...||.|:|:|.|..|.|||:.      :..:.::|...
 Worm   250 RETTLWRRNGEGGVECNACNLYFRKNNRKRPLSLRKDGIMKRNRRPRNESPNSAIRNTHQRHGHA 314

  Fly   757 SSC 759
            ::|
 Worm   315 AAC 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 23/47 (49%)
ZnF_GATA 691..742 CDD:238123 25/50 (50%)
elt-3NP_001367208.1 ZnF_GATA 243..294 CDD:238123 25/50 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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