DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAd and egl-18

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_001294448.1 Gene:egl-18 / 176992 WormBaseID:WBGene00001186 Length:379 Species:Caenorhabditis elegans


Alignment Length:455 Identity:98/455 - (21%)
Similarity:170/455 - (37%) Gaps:133/455 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 SITMKSDQKSKAMSGSSHSQFDSKLQKDSD--------------------IEKYENLQQQLETAA 410
            ||::.::.:.:    |:..|....||:.||                    :|:.:.||.:|:...
 Worm     2 SISIMTETRPE----SAEQQHHEVLQRPSDEPCSGCKQLQKDVAKTISMVMERMDKLQYRLDELL 62

  Fly   411 VLMDISKKIVISPPCSNPQSPCFSAA----VDTSIKS-SVIKSKRPSNQNEIQDGVEIDLSVKKQ 470
            ...:..|...:|...::| ||..|.:    |:|.:.. |..:.::|..::        ..:....
 Worm    63 KENNELKSSSVSSGKASP-SPAESRSSPKLVETVVAPVSGARKRKPKERS--------PPAAASP 118

  Fly   471 KNDYSNQRNA---APIHHFCQTPMLDIQSHLRSEEDFQNYSITI-NQVGGSDFKSKAPKASTGSL 531
            ..|:||..|.   .|::......|:.:.|.::.::..|.:...| ||...|..:||:.|.     
 Worm   119 LPDFSNLMNGFMFDPLNMSNPNGMMQLLSMVQQQQQQQQHHQHIENQQSVSPPQSKSVKI----- 178

  Fly   532 LDSGDSSDSHKLEMDITSSINDRK-TPDSLSSDHATDAATTQLWQALARSAAKSKEDNPASQIFR 595
                    ...::.|:....::|. .|.:..:.:..||.|.|.             .:.....|:
 Worm   179 --------EDPMDQDVKQEESERSDIPTATEAQNLLDALTAQF-------------SSNGQAFFQ 222

  Fly   596 NMMSQPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCIDVVNENVTDT 660
            ...:.|     ||:.|..:...|.:|       ..||:|:.                     :..
 Worm   223 TSTTSP-----PSSSSQVQAVIEAVA-------TPSSQSQD---------------------SSM 254

  Fly   661 YTTSEATPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGV 725
            :..:|.:.|              |.|.:   ||||.|..||.|||...|::|||.||||::||.|
 Worm   255 FEKTETSGD--------------PNAAR---CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKV 302

  Fly   726 NRPHSMRRDTIHTRRRRPKELERSKKKHKQMSSCSSIETTKQDFLTARESLAISGL----VLNKF 786
            .||..||::.|..|.||       |.|.|:.|:.:.|   ....||...::|..|:    .:|.|
 Worm   303 RRPIEMRKNHIQQRYRR-------KNKEKESSAATQI---FNQLLTQMPTMATGGVSTDGAINTF 357

  Fly   787  786
             Worm   358  357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 25/47 (53%)
ZnF_GATA 691..742 CDD:238123 27/50 (54%)
egl-18NP_001294448.1 ZnF_GATA 268..320 CDD:238123 29/61 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I7067
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm14342
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.960

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