DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAd and Gata3

DIOPT Version :9

Sequence 1:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_032117.1 Gene:Gata3 / 14462 MGIID:95663 Length:443 Species:Mus musculus


Alignment Length:423 Identity:107/423 - (25%)
Similarity:157/423 - (37%) Gaps:129/423 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 PPCSNPQSPCFSAAVDT---SIKSSVIKSKRPSNQNEIQDGVEIDLSVKKQKND----YSNQRNA 480
            |...|.|.|      ||   .:..|.::::.|     :.:.|::..::..|.|.    |.|...|
Mouse    16 PAVLNGQHP------DTHHPGLGHSYMEAQYP-----LTEEVDVLFNIDGQGNHVPSYYGNSVRA 69

  Fly   481 A-----PIHH---FCQTPMLD------------IQSHLRSEEDFQNYSITINQVGGSDFKSKAPK 525
            .     |.||   .|:.|:|.            ...|..|..:...:|.|....|.....|..|.
Mouse    70 TVQRYPPTHHGSQVCRPPLLHGSLPWLDGGKALSSHHTASPWNLSPFSKTSIHHGSPGPLSVYPP 134

  Fly   526 ASTGSLLDSGDSSDSHKLEMDIT------------------SSINDRK--------TPDS--LSS 562
            ||:.||. :|.|| .|......|                  |:..|.|        .|||  |.:
Mouse   135 ASSSSLA-AGHSS-PHLFTFPPTPPKDVSPDPSLSTPGSAGSARQDEKECLKYQVQLPDSMKLET 197

  Fly   563 DHATDAATTQLWQALARSAAKSKEDNPASQIFRNMMSQPFAFPVPSTVSFTKVPEEPIALLKDLS 627
            .|:..:.||       ...|.|...:|.:           .:| |....::.....|.:||....
Mouse   198 SHSRGSMTT-------LGGASSSAHHPIT-----------TYP-PYVPEYSSGLFPPSSLLGGSP 243

  Fly   628 EAQSSKSKPCRRKQSFPTKTDCIDVVNENVTDTYTTSEATPDDKKDKRNINLFNA------IPGA 686
            .....||:|..|     :.|:..:.||...|       :||..::|.....|.||      :.|.
Mouse   244 TGFGCKSRPKAR-----SSTEGRECVNCGAT-------STPLWRRDGTGHYLCNACGLYHKMNGQ 296

  Fly   687 QKDM---------------SCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTI 736
            .:.:               ||:||.|.|||:|||:..|:.||||||||:|||.:|||.:|:::.|
Mouse   297 NRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGI 361

  Fly   737 HTRRRRPKELERSKKKHKQMSSCSSIETTKQDF 769
            .||.|  |...:|||       |..:....:||
Mouse   362 QTRNR--KMSSKSKK-------CKKVHDALEDF 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871
ZnF_GATA 688..736 CDD:214648 27/62 (44%)
ZnF_GATA 691..742 CDD:238123 30/50 (60%)
Gata3NP_032117.1 Interaction with TBX21. /evidence=ECO:0000269|PubMed:15662016 1..257 58/277 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 6/17 (35%)
PHA03377 <76..260 CDD:177614 45/209 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..180 7/37 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..214 6/27 (22%)
ZnF_GATA 262..312 CDD:238123 10/56 (18%)
Flexible linker. /evidence=ECO:0000250 288..316 1/27 (4%)
ZnF_GATA 316..366 CDD:238123 30/49 (61%)
YxKxHxxxRP 344..353 5/8 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 412..443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830959
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.740

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