DRSC/TRiP Functional Genomics Resources

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Protein Alignment Schip1 and F35H12.1

DIOPT Version :9

Sequence 1:NP_001334735.1 Gene:Schip1 / 34393 FlyBaseID:FBgn0032221 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_001338799.1 Gene:F35H12.1 / 185333 WormBaseID:WBGene00018074 Length:448 Species:Caenorhabditis elegans


Alignment Length:555 Identity:99/555 - (17%)
Similarity:183/555 - (32%) Gaps:168/555 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 NENYSATSEN-SKRALQKPDLIYNLSQNYTTNPEFPSWSCTINSKYEGQLQGQSPIDIV------ 162
            |..|:::||: :.|.:|.|..:..:     ||.|       :.......|.|.:.:|::      
 Worm    11 NIGYNSSSESFAVRFMQTPSAVLKI-----TNGE-------MTEDNNNMLHGINGVDLLDLQSTD 63

  Fly   163 --GDFGGEVEREFELLLTGYKNKKEADELKGSNLDKICDAELSNGTEALKQTSSTR--LSGNSTR 223
              ..:......|....||.::..::.|...||       ...|..:..:..|.|.|  |.....|
 Worm    64 NDDQYSNSSSLESRNSLTNHQGSQDGDGESGS-------TSCSEDSFEMSSTCSVREELYEEEKR 121

  Fly   224 KNKKKNTPYGHQIVKTKHPKPSHDERQLPPDTFDYKTYSQRKYIICDADQYSSVPEKNKNDSPNL 288
            :..::|.....   ::...|.|..|.|..|.....:.:|:     .|:|..:....|.:...  .
 Worm   122 RLIERNEVTSR---RSDFSKESSYESQFRPPASQIQQHSE-----LDSDLQNDFMRKIRQSV--A 176

  Fly   289 NQAE-----IPNMSSLEIGGSGSQQNLD------EDNNK------VASRKYSNQSRWSQYLEDPI 336
            ||.|     :|.:..:::     :|.|.      ||..|      ::.||..|.| |.:|     
 Worm   177 NQIEHIDTGLPQLDFVKL-----EQQLTTAAKEREDVEKRMTFDNISERKECNDS-WRRY----- 230

  Fly   337 KYSKDPCSTMVLEQFDAYKIANDMDVETLQNHYKKVKQIEKKRRFNRDEIRKRLAIGDKDSLNND 401
                        ..|               .|.||...:              |.:....:|...
 Worm   231 ------------PSF---------------QHQKKTNSV--------------LRLPPSKNLQVC 254

  Fly   402 IKKEEFLTGSDNESYSSDSETCPKLSSGVLRKQSEFCETKRNKEFENDKIFQKNQINQDKSMNHM 466
            ...|...|.::|...|.||:             .|....:::|...|.|......:...:|:..:
 Worm   255 FMNELSETDTENGEDSEDSD-------------MEHMYVRKSKSVPNFKNATSPDVLDSRSLQEL 306

  Fly   467 NGNPIGTTDYPSDENLFFFANQ--SKLQIEVRIALAQSKEIAQMKVKARKHGVTPIVDVIRSMLC 529
            :..        .:.||....|:  ..|:.|....:..::|.|...:...:.|.:...:|.|.   
 Worm   307 HEK--------LERNLTLNDNERCKMLKHEAHRVMKIAEEKASTALAEYRRGRSKASEVPRQ--- 360

  Fly   530 DVGIKMNSNHRWISRQLLTGIQVPTLQLLVNNLQEYIENLNVTLLESLKERDDLNSDQDD----- 589
                         :||.|:..::|.:|::...::|.|...|:.|:..|.|||:|:.:.|.     
 Worm   361 -------------ARQYLSKTKLPDIQIIHQQIEEAICRKNMELVGLLLERDNLHMEHDSLRVDI 412

  Fly   590 ----------ILHDLEKINNFFVFQQQSGQQVNKI 614
                      ||.|::::     .|.|.|.:.|.:
 Worm   413 DDYTQQKSPLILLDMKRL-----LQLQKGLESNSL 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Schip1NP_001334735.1 None
F35H12.1NP_001338799.1 SCHIP-1 204..418 CDD:370831 51/297 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167258
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003916
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_108210
Panther 1 1.100 - - LDO PTHR13103
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.790

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