DRSC/TRiP Functional Genomics Resources

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Protein Alignment Schip1 and schip1

DIOPT Version :9

Sequence 1:NP_001334735.1 Gene:Schip1 / 34393 FlyBaseID:FBgn0032221 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_012818101.1 Gene:schip1 / 100126222 XenbaseID:XB-GENE-1011068 Length:530 Species:Xenopus tropicalis


Alignment Length:591 Identity:127/591 - (21%)
Similarity:209/591 - (35%) Gaps:190/591 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 QDSILSNC-----DNGNTYISEEESVNRSEN------IPDIVNENYSATSENSKRALQKPDLIYN 127
            ||.:.|||     .:.::..|::.|.:.|.|      .||...:.....|:...|:         
 Frog    63 QDPLHSNCMEKRSPSPSSLSSDKMSSSISMNTFSEGCTPDYREDGMDLGSDACSRS--------- 118

  Fly   128 LSQNYTTNPEFPSWSCTINSKYE-GQLQGQSPIDIVGDFGGEVEREFELLLTGYKNKKEADE--- 188
             |...::|...|...|..:...| ..|:.....|.:.|   :|..|:|       :..|.||   
 Frog   119 -SSESSSNKVTPCSDCKSSPSLELAALEDYEEEDFLVD---KVSDEWE-------DDDEEDEVGV 172

  Fly   189 LKGSNLDKICDAELSNGT------EALKQTSSTRLSGNSTRKNK-KKNTPYGHQIVKTKHPKPSH 246
            :.|...|. |.|.:..|.      |.:|..:.:..:||.:.|:| ..|...|....|.||..|  
 Frog   173 VDGFPKDN-CFARIGTGRSLAEEFEDVKSGTVSASNGNPSPKHKLNGNLVVGRPPSKGKHSPP-- 234

  Fly   247 DERQLPPDTFDYKTYSQRKYIICDADQYSSVPEKNKNDSPNLNQAEIPNMSSLEIGGSGSQQNLD 311
                                                  .|.||......::|  .||||:...  
 Frog   235 --------------------------------------KPQLNNCRGTFVNS--FGGSGTLMR-- 257

  Fly   312 EDNNKVASRKYSNQSRWSQYLEDPIKYSKDPCSTMVLEQFDAYKIANDMDVETLQNHYKKVKQIE 376
                                 |:|      ...||..|..:.:........:..:|..:......
 Frog   258 ---------------------EEP------QLPTMDWEALEKHLAGLQFQEQEARNQRQTKSNYT 295

  Fly   377 KKRRFNRDEIRKRLAIGD----------------KDSLNNDIKKEEFL-------TGSDNESYSS 418
            ..::..|:.||::||:|.                |.||::.::....|       :|||.:|.:.
 Frog   296 SAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKDSDAD 360

  Fly   419 DSETCPKLSSGV--LRKQSEFCETKRNKEFENDKIFQKNQINQDKSMNHMNGNPIGTTDYPSDEN 481
            ||:|...|.:.:  :.|||.....:...|.|::                            |.|:
 Frog   361 DSKTETSLDTPLSPMSKQSSSYSDRDTTEEESE----------------------------SFED 397

  Fly   482 LFFFANQSKLQIEVRIALAQSKEIAQMKVKARKHG--VTPIVDVIRSMLCDVGIKMNSNHRWISR 544
            :.|.:.|.|||.|.::|||..|.:|:|:|:..|..  .:|:.|::..|          .|  ||.
 Frog   398 MDFISRQKKLQAEAKMALAMVKPMAKMQVEVEKQNRKKSPVADLLPHM----------PH--ISE 450

  Fly   545 QLLTGIQVPT---------LQLLVNNLQEYIENLNVTLLESLKERDDLNSDQDDILHDLEKINNF 600
            .|:.....||         ||::||:|...||:||..|::.|..||:|:.:||.:|.|:|.:...
 Frog   451 CLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQLLLIRDELHMEQDAMLVDIEDLTRH 515

  Fly   601 FVFQQQ 606
            ...||:
 Frog   516 AESQQK 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Schip1NP_001334735.1 None
schip1XP_012818101.1 IQCJ-SCHIP1 4..>101 CDD:373608 9/37 (24%)
SCHIP-1 298..521 CDD:370831 68/262 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 65 1.000 Domainoid score I9911
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003916
OrthoInspector 1 1.000 - - oto103659
Panther 1 1.100 - - LDO PTHR13103
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.100

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