DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RnrL and rrm1

DIOPT Version :9

Sequence 1:NP_477027.1 Gene:RnrL / 34392 FlyBaseID:FBgn0011703 Length:812 Species:Drosophila melanogaster
Sequence 2:NP_001120566.1 Gene:rrm1 / 100145720 XenbaseID:XB-GENE-1014077 Length:797 Species:Xenopus tropicalis


Alignment Length:801 Identity:592/801 - (73%)
Similarity:692/801 - (86%) Gaps:4/801 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLAAEIAA 76
            ::|||||||||.|.|||||||||||||.||::||||..||::||.|||.||||.|||.||||.||
 Frog     1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYNGVTTIELDTLAAETAA 65

  Fly    77 GLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATR 141
            .||..||||||||||||||||||||||.||||.|||||:||....:..|:||:...::|..|..|
 Frog    66 TLTTKHPDYAILAARIAVSNLHKETKKIFSDVMEDLYNYVNPLNGKHSPMVSKETLDLVLANKDR 130

  Fly   142 LNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSE 206
            |||||||||||.||:|||||||||||||.:||:|||||||||||::|||..|||||:||||||||
 Frog   131 LNSSIIYDRDFSYNFFGFKTLERSYLLKIDGKVAERPQHMLMRVSVGIHKTDIDAAIETYNLLSE 195

  Fly   207 RYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGT 271
            ::|||||||||.|.||||||||||||.|..||||||:.:::|||:|||||||||:.|.||||.|:
 Frog   196 KWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 260

  Fly   272 SICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRA 336
            .|.||||.||||||||||:||.||||||||.||||||||||||||.||||||:|||||||||.||
 Frog   261 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVFEFLDLKKNTGKEEQRA 325

  Fly   337 RDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSLW 401
            ||||||:|||||||||||.|.||||||||:||||.:||||:||:|||:||:||||.:.||||.||
 Frog   326 RDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFEELYERYEREGRARKVVKAQQLW 390

  Fly   402 FAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFV 466
            :||||:|.|||.||||:||||||||||||:|||||||||||||||::.||:|||||||:||||:|
 Frog   391 YAIIESQTETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYV 455

  Fly   467 TPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYE 531
            |||:::|||||.:|||::.:||||||:||:||:|||..||.||||:|||:||.|||.||||:|:|
 Frog   456 TPERSFDFKKLADVTKVIVRNLNKIIEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFE 520

  Fly   532 SEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLK 596
            ||||.|||:||||||||.|||:|||||:..|||:|||||||||||||||||:..||.||||..||
 Frog   521 SEEAQLLNKQIFETIYYAALESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTPTGLWDWAALK 585

  Fly   597 ESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDL 661
            |.|..:|||||||:|||||||||||:|||||.||||:|||||||||||||:||.||::||||..|
 Frog   586 EKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTERGL 650

  Fly   662 WDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEP 726
            |:::||||||::.|||||:..||..:::|||||||||.|:.|.||||||||||||||.|||||||
 Frog   651 WNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIHVAEP 715

  Fly   727 NYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRE 791
            |||||||:||:.||.|||||||||||:||||.||||:||::    :..:...::.:.:|.:|::|
 Frog   716 NYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFTLNKEK----LKEKELISKETMEKDKEEKE 776

  Fly   792 RKMADMVCSLENKDACMSCGS 812
            :..|.|||||||:|.|:.|||
 Frog   777 KNKAAMVCSLENRDECLMCGS 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnrLNP_477027.1 PLN02437 12..812 CDD:178056 590/799 (74%)
rrm1NP_001120566.1 PLN02437 1..797 CDD:178056 590/799 (74%)
ATP-cone 1..89 CDD:281475 68/87 (78%)
RNR_I 167..741 CDD:153088 443/573 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 863 1.000 Domainoid score I60
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H806
Inparanoid 1 1.050 1228 1.000 Inparanoid score I187
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D156716at2759
OrthoFinder 1 1.000 - - FOG0003792
OrthoInspector 1 1.000 - - oto104719
Panther 1 1.100 - - LDO PTHR11573
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2647
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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