DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp14 and Usp1

DIOPT Version :9

Sequence 1:NP_001260321.1 Gene:Usp14 / 34387 FlyBaseID:FBgn0032216 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster


Alignment Length:514 Identity:90/514 - (17%)
Similarity:151/514 - (29%) Gaps:208/514 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 LTNLGNTCYMNATVQCLNAVP-------------------------------------------- 126
            |.|:||:||:|:.|..|...|                                            
  Fly   317 LCNIGNSCYLNSVVYTLRFAPHFLHNLHHLIQDLNVVQQTIVRQQTARSASLGKNVSAAQLEHAR 381

  Fly   127 -----ELRTALSTFS---------NDGT-DTMSTAFSISSAMKSIFAQM---EKGTTVTPI---V 170
                 :|.|:...:|         |.|: .:.||..|::..:..::..:   |...:..|.   .
  Fly   382 SWSSKDLATSTDQYSGQNGGVNSGNGGSGSSKSTHQSVTEKLHELYNNLHGNEMADSTEPYHADT 446

  Fly   171 LLQALHRASPQFAQTGENGTYRQQDANECWAEILKMLQQKLRPKNQEPSNTVQKRHSSFIDQFFG 235
            ||.|:...:..|...      :||||:    |.|..:...:|..||.....:.:......:.:..
  Fly   447 LLHAIQDVNATFEGN------QQQDAH----EFLMCVLNCIRETNQSLIKAIGECPEVIANGYIA 501

  Fly   236 GTFEVKMSSEEDPDEP-----------STVTSENFLQLSCFISM------DVKYMQSGLKSKMKE 283
            ...||.....:|..:.           |..||:.....:.|.|.      :||..:|   ::::.
  Fly   502 NPDEVDTGEGQDRTDSTASQNLNAGNGSLATSQTTTTKTSFFSRKSKRKDEVKPSKS---TRVQS 563

  Fly   284 QLVKKSETLG------------RDAKYIRTYLVS-----------------RLPAYLTVQFVRFQ 319
            .|.:.|.|.|            ....|:.|..:|                 ...|.|.......:
  Fly   564 PLKENSPTAGGITGAGTAHATANSLFYLNTVDLSGASSTSGSASTSASGVVSTSAALPTPPQATK 628

  Fly   320 YKGKEGIN-AKVLKD-------IK------FPIDFDAFELCTPELQNKLCPMRSKFK-------- 362
            |...:.:| |.||||       |:      |..||:...:.|.:..:  |...::.|        
  Fly   629 YSSDDEMNSATVLKDKMRLEERIRELNLNFFSSDFEGIVVLTTKCLS--CETITRQKQGMLDISV 691

  Fly   363 ----------DLEDKK----MEVDVVKRNEPNEEK-------------KDVKYEQF--------- 391
                      ||:||.    ....:.|.....|.|             :.:.||..         
  Fly   692 PVPISGYDNADLQDKPSTYIQNSCITKEYFRGENKYSCNQCTGYTEAIRSISYEVLPRLLVIQLN 756

  Fly   392 WFDD-----------------------DLGSNNSGY-YTLQAVLTHKGRSSSSGHYVAW 426
            .|..                       :||..|..: |.|.:|:||.|.:.:.|||:|:
  Fly   757 RFSGGMEKVSTYVPTTFTLPCFCATCCELGEGNKLHVYKLYSVITHVGATLTVGHYIAY 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp14NP_001260321.1 UBQ 4..73 CDD:214563
UBQ 5..73 CDD:294102
UCH 103..467 CDD:278850 90/514 (18%)
Peptidase_C19A 105..467 CDD:239122 90/514 (18%)
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 90/514 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456838
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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