DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp14 and Ubfd1

DIOPT Version :9

Sequence 1:NP_001260321.1 Gene:Usp14 / 34387 FlyBaseID:FBgn0032216 Length:475 Species:Drosophila melanogaster
Sequence 2:XP_006507976.3 Gene:Ubfd1 / 28018 MGIID:107301 Length:373 Species:Mus musculus


Alignment Length:94 Identity:28/94 - (29%)
Similarity:52/94 - (55%) Gaps:8/94 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VKVKWGRELYTDIVVNTDEEPILFKAQLFALTGVQPDRQKVMCKGGILKDDQWNLQIK--DGAVV 68
            :|:.|.:..: |:.|..|......|.::.::||:.|..||||.| |::.:|:...:||  .||.:
Mouse   147 LKIIWNKTKH-DVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK-GLVPEDKTLREIKVTSGAKI 209

  Fly    69 LLLGSKESVPEVPA--TPVKFIEDMNEAE 95
            :::||  ::.:|.|  ||....:...:||
Mouse   210 MVVGS--TINDVLAVNTPKDAAQQDAKAE 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp14NP_001260321.1 UBQ 4..73 CDD:214563 20/68 (29%)
UBQ 5..73 CDD:294102 20/68 (29%)
UCH 103..467 CDD:278850
Peptidase_C19A 105..467 CDD:239122
Ubfd1XP_006507976.3 Ubl_UBFD1 145..214 CDD:340567 20/68 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1872
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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